Gene detail

Detailed information of KAL9967735.1 in Oculina patagonica

Genomic Location: chr7:23968607...23978309
NR annotation: KAJ7375386.1, hypothetical protein OS493_002146 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-ACROYT_G026025.t0

ATTTTTTCGGTTTGTTTTTCCCGGAGGAGTTGGTTTTACAAACGTTGGTGAGATTGTTCGAATTGTGTTTCAAATTTTACATCTATGGCTTTTTCATTTAATCGTTTCATCTTGTGTGGAGCTGCACTTTGTAGCTTATGCAATGGTTTAGACGGCGGAGACATCTTGTGCAAAATACAAAAACACTCCTTTCAAGGAAGAGAATTATCAGTGAACCCAGACGAAACAGTTTCCCTAAATTGCTCTGTTGTCCAAGGAAAACCAGCAAGGCAGATCAGATGGTCCAAAGAAGGCGATAATACGAACGGTCAGCGGCTACTCAACGTTTCATCTTTCTCAATGCCAGGTCTCTGGACGAGTTTACGATTAAACAATGTCAGCGTTGAGGAATCTGGAACATACAAGTGTGAGGTGAAGAAAGAAACGCAAAGGGATGTTTGCAAAGTAGTTCTTCATGTCTATTCCCGCCCACGTATTTTGAAAACGAAGGGATTCTTTACTACAACACCACAGTTCCTGACTGAAGGACGTAATCCTGTTTTCCATTGTTACGCCAGTGGCTGGCCGAAGCCTTCCTTTGCATGGCGTAAAGACGGAAAGGAGATTAATGATGGCGATGCCTTGAACTCGTACGTGCTAACAAAAAGAGCCTTCGGCCTAAATGCAGGCCTGGACTTAGATATTCTCTACGTCAGACAGGAACATGCTGGGCGATACAGTTGTGTTGCAAAAAACGTGTTTGGCGAGCAACAGCACAACATTAATCTCTTCATAAAAAGAAAACATCCAGGAAAACCTCCAAAAGTCTACCCATACGCGTCTGTCAATCAAGTGACCATCCAAAGAAGAGAGGACGCTCGACTGACGTGCGTAGGAGAAAACACTCCAAACATAGATACGGTTGTTTCTTGGGTGTTCAATGGAAAGTCCCTGCCGCTGGACAAAAACAAAGATTCTCATCATGTGTCAGACTTCGTGTATTTTCAAGAGCAGGACACGCTTAAAGTCAACTTCTCTCTCCTTATAAGGAATGTGACGGAGCGTGATACTGGGGCTTATCACTGCGGGGTTCATACTCTCAAAGGAAACGACTCAGACACGATTTACCTCAGCCTTTTTCAGCCAGGTTCTAAACAGGTTAAGCGCAAGGCCTCCTTAACAGAGATCCTGCTCGTGGGTGCAGGGATCTTTTGCGGTCTGGTAACAGCTGCTGTTGCTCACCGACAATGGAGCAGGAGACGAAGACATTGGAAACATGACTTACAATCAAAAGAGTTCCAGTACGACGTTTTTATTAGCTTTAGCAGCCTCGACTACAACTGGGTACGAGACAATCTCACTCCGGTGCTGGAAAGAAAACGAATCAACTATTGCATCCACAGCCGGGACTTTATAGTTGGGAAAGCAATCATCGAAAATATTGCAGATAGCGTCTACAACAGCAGAAAGGTGCTGGCAATTATTTCACACAGTTATCTTGCGAGCAACTTTTGTCGTGAGGAATTGGAAATCGCTTTGTACCGCTGTACAGAAATGGCGGACTCGTCTCTGCTGCTAATTCGAATCGATGACGTTGACAAGAAGAGACTTCCCAAACCGTTAAGAAGACGTACGTTTTTGGATTATTCAAGTGCCTCAGAGAGAATAGACTGGGAGCAAAGATTGTTAAGGCATATCAAGTTTGATGACAAAGAATCGAGATTAGGACCCAGCATTTCTACCGATAAAGTTCAACTCATAAGTGAATCCAACTTAAAGTGTGTTTGATCTGCTGAACTGGCCTGAACTTAAACGACTGACAGATGTGCAGATGTAGTTTTAGAATGCAAAGTCCAATAAGTAACACACCTCCGCATAAATGACTTGACTTCTTAAGTAGGCAGAGTGGCCTTTATTTATATATTGGTCCCCTGGTAgggctcccatatgaaaggggcggggatgctcgtcggacaTGAAGAGACCTATCTGAACGTGaccaaaaaagataaaaaagataaaaaagacactgaaatacaatttatttttacaaatttatttatgtgcaaccctaaacgagaccttgacgaaactccctaagtgagaccaaaaatccgaaatttataACCCTAAGCGAGTCTTCGAGCATCCCCGCCcttttaatatgggagtccccgaGCCAATCAAACAGGGGCTTGGATATAGATTGAATATTACCCACCAGCACGCGAGGATTTTTCCCACTGCTCAATAACGCAATGTTTTCAAACACCTCTACGTGAAATGTAAGCATACATCCATTTAGATGTGCAGTCATCATTTTTaggaaaaaatgataaatgGTAATTAGAATTGTTCTATCTGTTAAATTTAAGACGATGTTTGACCGTTGcatttttcacttttcttttcaaGAGCACTGACTGCAGATTTTACATGTGGGTGTCTTACGTCTGTTTATCATTCAAATTAGGGCAATATCCTGCCAACTTGATTTAAATGCTGACGCATGCTGCTCGAATATCCTTTCACGCCgaaacaggaaaacaaaaattttaatttttggtcgATCTACATTGAGACAGTTGCAACAGTAATAAAACTCGAAGGCGACATTTGGCACTAATAAAAATTGTACGAACAACTATAAATGAAAAggactttattttatttacaaatattAGCGAAAGGCAACCCGTCCGGGGCATTTGTCACCGTTTGTGAACGACATAATTAACGGAGCTTTTACAACTATTATTAACATCTATTCAAGAATGGTTGGATTATTTGAAAAAAGATTATAAATTACAAAGCTTAACATTAAAACTTGCTCTTTAAAGCAACGTCAGTAACACTTCTTAGGAAACTTTTAATTACGTCTGCCTACCGAACGAAACGAAAGTTTGTCGAGTCAAAACTAGTACTTGCGTCTTCGTCTGGCCAAGACTCTAAATGTACAACGTCTATCTTGATTGTTTGTGTTGATAATTAAAGATAAGTTTTCATCACAGTTGCTAGAAACGCCTAGGTACATTGCTGTATTAGTAGCcgtatatttatattttagatGCTTTCCAACTTTTTCTTCCTCAAACAGGAAGGCATCACCAGTTGCCCTGTCGCATTGTTGCTGTTCCTGtaaatgaaattaaacaaaacatcc

Protein

Uniprot

Uniprot term	Description
B2LT65	Toll-like receptor 2 OS=Ovis aries OX=9940 GN=TLR2 PE=2 SV=1
Q704V6	Toll-like receptor 6 OS=Bos taurus OX=9913 GN=TLR6 PE=2 SV=1
Q9Y2C9	Toll-like receptor 6 OS=Homo sapiens OX=9606 GN=TLR6 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13676	TIR_2	TIR domain	Domain	Interproscan
PF00047	ig	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR035897	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR015621	Family	Interleukin-1 receptor family	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR000157	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR013151	Domain	Immunoglobulin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11890	INTERLEUKIN-1 RECEPTOR FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0007165	Biological Process	signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05171	IL1RL1, ST2; interleukin 1 receptor-like 1	-	Cytokine receptors	ko04050	deepkoala