Gene detail

Detailed information of KAL9967948.1 in Oculina patagonica

Genomic Location: chr7:26806902...26814941
NR annotation: KAJ7325376.1, hypothetical protein OS493_029927 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-ACROYT_G026262.t0

ATATGTGAGCTTTTTTTGGTTTGATCTCATCGGTCCTTAATAGATCAAGATGACGGATCATAATAAGCTTGAGCTGTGGCGCAGAAGTGTTGGGCCGTGGATGTCACAGTTTGAAAGCAACGTTTGCTCCATGAATAACAGTGATGAAGGATCTGAAGTCGTTCCTACTTCCAACTACGTCCGGAATTCTCAGGGTGTGTTTATCAAGAAGAAGGGTCAGCctaataagaaaagaaaagacaagaCAGACAACTCTCACATTAAGCTTAGATATAATCCAAGCAGTGATGAAAAAATTAAGGGTGATCCACACAAAACTGTCTTTGTTGCCCGACTGaacTTCAACACCACAGAAGAAACACTATTTGAGTTGTTTGGCAGGTATGGAACAATTAAAAGGCTACGACTGGTAAAGGatgtaaaaacagaaaaatccaAAGGCTACGCTTTTGTTGAGTTTTCGGATGAAAGTGAAGCCAAGGGAGCCTTAAGGGAAGCTAAAGATGAAAGATTCATGGTTGATGGGAGAAAGGTACTTGTTGATCGTGTACGAGCTGGTGTGGTGCCATCTTGGCTACCGCGTAGACTAGGCGGTGGGCTGGGACAGAGACAGAAAGGAACGCAGAGATTTGCTTGGAAGCCTGCGTACTTTGGTGACACGTCTCGCATAGATCAAGATGAAATCTACCGCAAACAACAACTGTGGATAGAGCACAACAGACGTTCCATGAACATTTTCTCCTAAAAAGACTAAGAATTTCACCAAACCGAACGCTTCCACGAGAAAACGTACACATCAGCCGTTGATCAGATGTTATGTTACACACCGTTGTGATCACTGAAAGATGTCTTCATCCTCGAAGTGAAAAGATGACATTTCGTGGTGCTATATTAATGTGGCTTCGAGAATCGCACGAACCAAGAAGTTTTCATTCACTGACCAGCGGCTTGCTTGTAAATCCCTGTCAGCGGTGGTTACTATGGTAACTGTGACTGTCACCATGGTTTCTCTCAATGGTAAACTCCTTTCTCCAATGTACATATATGAAATTTGCGATGTAGaaattttgattattattaataataataaaaaaaaaaacgcaataaGCCCACAAATTTCTCATTTACTTTGACCAAGGATTGACGCTCAAATTTTCACCAGCTTTTCAAATTCTTAAAGAAACTACGCCACGAATTTCTTATGTTGGAAAACACAAGCTAGAGTTTCGCACGTTTATCGTTCTTGGTGGGGTGTTACTGTAATACGCTTTAATCTTAGCAGGAGTTTCTGCATTAGTTCATTGTCAACTGAAAGTTGTAAAGGGTTAATAAACTGCCCTAGCGAATTCTGAGAAGCTGACGTTTCAACTTTCAAAGTGCACCACTTTGCTCCCCGCCGACGAAGGACTGACGTTCAAGacgtcagcttttcaaaattcgctacggcagtttatttatttttatcaactTACAATTGATAGTCAACTGAGTGCCACACCTGTCCGCCGACGCAACACAACAGTTGCTTTAGAAActaataacttttttctttaatttaaaccATCCTTgcctcattttattttataattataactTCTGTTTTGCGTTTCAACCTTGGTAAACTGACATTTTTAAGTTCTTAGTTATCATCAACTGGAGGTTgataaaggttaaaaaaagcCGTGGCGAATTTtaaaaagctgacgtttcgagagTAGGGGCAATATTCTGAAGttcccttcaatttgaaagtaatttcgTAGTTACTAACTATGGTAATTTTGTACATGCCAAAGGCGTAATATGTTGTGGCATGGCTACTTTACAAGATGTTTCATTTTCCATGTCAACTTCAAATCGATAATCAGCCAATTTTTTTGTCTCGTCCGCCGACGCGCGGCAGAAGGATTTGTTTCGCAAAACAGTTTTTTTAGGAAATAATCTGCATCGATTTAGAAGAATTGTACTAGTTTGTGTTTATTCTTCCTCGAGAATTGTTTTTGTGCCCTCTGTTGTGAATGTTAAACGATGACAATTTTAGACTAGagttatttctttattaatagctgttatCATTTAATCGTTTACTCATCGGTTGAGTGCCCGCCCTAGCGGTAACAAAAGTGTTTCGTATTCTAAATAGAATTGTTAACCGCCTTGTATGCAAAATAAGTCGTCAAGGGAATCTTGCTATTAGCCACTGTTATTACC

Protein

Uniprot

Uniprot term	Description
Q8VY74	U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP35 PE=1 SV=1
Q42404	U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana OX=3702 GN=RNU1 PE=1 SV=1
Q1LZH0	U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Bos taurus OX=9913 GN=SNRNP35 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR051183	Family	U1 snRNP 70 kDa and U11/U12 snRNP 35 kDa	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13952	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0017069	Molecular Function	snRNA binding	Interproscan
GO:0071011	Cellular Component	precatalytic spliceosome	Interproscan