Gene detail

Detailed information of KAL9968215.1 in Oculina patagonica

Genomic Location: chr7:30235155...30259992
NR annotation: KAJ7390048.1, hypothetical protein OS493_027573 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

ACROYT_G026564

ATGATGTTCTCGTCCACGGGAATCAGCCCACAGGCTGGAGTAATTCTTCCTCAAGTTACAACACTGTTAAATAGTTTTAAAAAGTCATCACTTGGAAGGTATATGTCATATGCACAGATAAAAACACAGTGTTCTAAGAAAGTAAAATCAAAGAAGACAGAACAAAGCTTGGTAACAGCATCAGATCTGGAGACAAGCAACAGTAATCATGATCCATATGCAACATTTCTTGATGAATTTGGCCTGTCAACAGTTCCTGCCGATATATTAACGCAGCTCACCACGCCCCTGTCTGTCTGCCACTGTAGCACACAAAACAGTAGCAACCCATGGACAGTTTCTCATGTCTCATCAGAATCCTTCTTTAAAAACAAACATGGCTTTTCAAGTTTAAGTCAATCCAGCCCTAATCCTTCAAGACTCAAATCGTCCATCTTCATGTCATCGTTTACAAAACTACCATGGTTACACACATCATTTCATATTCAAAGAAGAGGTGTACACTCAGTTTCTGTCCGGCGAATACAACAATTGGAGGAAAGAGCAAATGCAGAAGAACACAATCCCAGGGCACAGGCAGAGTATTTACGGGCATTAGTTCAGGAGGACCCAAGCTATGTCGTTAAGAGATATGAAAGCAGGAAATATGCCATAGATGAGTCTGTAACAAATGAATACTTGAAGGCATTGGTGTTGACTGACAGAGTGAACGGTGTTGACATTAAAAAGATCTTATCATCATCTAATGAACACGGCAGTCCATCGTCTTATGGGACAGCAGCCTCTCCTGCCATTCAGCCTGGAAGTGAAGAAAATCCAATGTATGTTATTACACAAAACCAAAAAGGTGCATTTTTCAAGGAACAGCTTTGGAACACATTCAGATTTCTGATTGCTTTGTTTTTAATCCTCTCCCTGATTGAAGCTCAACTTCAAATGAAGATGAGCTCAAGCCAGAAGGATATCCATCCAGACAACGTGGACAGGAAATGTAGATTTACTGATGTTCAAGGGGTGGAAGAGGCAAAACAAGAGTTAAAGGATGTTGTTGAGTTCCTGAGAAACCCAGAGAGATTTAAAAGGCTTGGGGGGAAAATGCAGACTGGAGTGCTTCTAATTGGCTCACCAGGAACAGGCAAGACTCTTCTCGCCAAGGCTGTCGCAGGCGAGGCCGGAGTACCATTCTTTTTCTGCTCTGGTTCTGAGTTTGACGAAATGTTTGTTGGAGTCGGAGCTGCACGAGTCAGAAATCTCTTTTCTGCCGCCAGAGAACATGCTCCTTGCATTGTGTTCATTGATGAGCTGGATGCTATTGGAGGTACCAGAATTGTTCACGATCATCAGCCCTACTCGAGAATGACCCTTAATCAGTTGCTTGTTGAACTGGACGGATTTGACAAATCAGAAGGAATCGTTGTGATTGGAGCAACAAACTTCCCTGAAGTGCTTGACAAGGCGCTTGTCAGACCTGGTAGATTTGACACCAAGATAACTGTACCCATGCCTGATGTCAAAGGTCGTCACGACATCCTCAAGCTACATCTCAAGAATGTACAAGTTGCTGATGATGTCAAGATAGAACAGCTCGCCAGAGGAACTGTTGGCTTCTCAGGTGCGGACCTAGCTAACATGGTAAATGCTGCAGCAATTTACGCTGCAAGTGAAGGAGACACAAATGTTACAACCAAGCATCTTGAATTTGCAAAAGACAAAATTATCATGGGCCCTGAACGAAAGAGTGCAGTCATTGAGGCTAAGAACAGGGAATTGGTGGCATATCATGAAGGTGGACATGCATTGGTGGCCCTGTACACTCCAGAAGCTTTGCCGATACACAAAGCAACCATTGTACCGCGAGGCCAGGCTTTGGGAATGGTTTCCCAGTTGCCTGAAAAGGACGAGTTAAACTGGTCTAAAGCCCAGCTGCTAGCAAGGCTTGATGTAGCAATGGGCGGCCGAGTAGCAGAAGAGCTTATCTTCGGCAAAGAAAACATAACAATGGGAGCTGCAAGTGATATGGAATCTTCAAATACCATCGCACGCGCCATGGTGTCAATGTACGGCATGAGTGACAAGGTTGGAATGGTCCAAGTGAAGGATGTTGAGAAATCGAGCCCTGAGCTACAGGCGCTGATTGAAAGCGAAGTCAAGCAACTTCTTAAGGATTCATACGAGAGAGCCAAGACTATACTCCAGACGCATTCCAAGGAACATAACCGTTTAGCGGAAGCTCTGTTGAAGTACGAGACCCTTGACCTACAAGAAATCAAGCAGGTTATCCAAGGAAAACAGCTCTCTAGAAGTCTGTGA

Transcript

rna-ACROYT_G026564.t0

GAAAGTTGTGTAACTAAATTTGTGGAATCTACGGCTAATGTTGTGATTTTCCTGGAGTTTAACCAATCGAATGATGTTCTCGTCCACGGGAATCAGCCCACAGGCTGGAGTAATTCTTCCTCAAGTTACAACACTgttaaatagttttaaaaagtcaTCACTTGGAAGGTATATGTCATATGCACAGATAAAAACACAGTGTTCTAAGAAAGTAAAATCAAAGAAGACAGAACAAAGCTTGGTAACAGCATCAGATCTGGAGACAAGCAACAGTAATCATgatCCATATGCAACATTTCTTGATGAATTTGGCCTGTCAACAGTTCCTGCCGATATATTAACGCAGCTCACCACGCCCCTGTCTGTCTGCCACTGTAGCACACAAAACAGTAGCAACCCATGGACAGTTTCTCATGTCTCATCAGAATCcttctttaaaaacaaacatgGCTTTTCAAGTTTAAGTCAATCCAGCCCTAATCCTTCAAGACTCAAATCGTCCATCTTCATGTCATCGTTTACAAAACTACCATGGTTACACACATCATTTCATATTCAAAGAAGAGGTGTACACTCAGTTTCTGTCCGGCGAATACAACAATTGGAGGAAAGAGCAAATGCAGAAGAACACAATCCCAGGGCACAGGCAGAGTATTTACGGGCATTAGTTCAGGAGGACCCAAGCTATGTCGTTAAGAGATATGAAAGCAGGAAATATGCCATAGATGAGTCTGTAACAAATGAATACTTGAAGGCATTGGTGTTGACTGACAGAGTGAACGGTGTTGACATTAAAAAGATCTTATCATCATCTAATGAACACGGCAGTCCATCGTCTTATGGGACAGCAGCCTCTCCTGCCATTCAGCCTGGAAGTGAAGAAAATCCAATGTATGTTATTACACAAAACCAAAAAGGTGCATTTTTCAAGGAACAGCTTTGGAACACATTCAGATTTCTGATTGCTTTGTTTTTAATCCTCTCCCTGATTGAAGCTCAACTTCAAATGAAGATGAGCTCAAGCCAGAAGGATATCCATCCAGACAACGTGGACAGGAAATGTAGATTTACTGATGTTCAAGGGGTGGAAGAGGCAAAACAAGAGTTAAAGGATGTTGTTGAGTTCCTGAGAAACCCAGAGAGATTTAAAAGGCTTGGGGGGAAAATGCAGACTGGAGTGCTTCTAATTGGCTCACCAGGAACAGGCAAGACTCTTCTCGCCAAGGCTGTCGCAGGCGAGGCCGGAGTACCATTCTTTTTCTGCTCTGGTTCTGAGTTTGACGAAATGTTTGTTGGAGTCGGAGCTGCACGAGTCAGAAATCTCTTTTCTGCCGCCAGAGAACATGCTCCTTGCATTGTGTTCATTGATGAGCTGGATGCTATTGGAGGTACCAGAATTGTTCACGATCATCAGCCCTACTCGAGAATGACCCTTAATCAGTTGCTTGTTGAACTGGACGGATTTGACAAATCAGAAGGAATCGTTGTGATTGGAGCAACAAACTTCCCTGAAGTGCTTGACAAGGCGCTTGTCAGACCTGGTAGATTTGACACCAAGATAACTGTACCCATGCCTGATGTCAAAGGTCGTCACGACATCCTCAAGCTACATCTCAAGAATGTACAAGTTGCTGATGATGTCAAGATAGAACAGCTCGCCAGAGGAACTGTTGGCTTCTCAGGTGCGGACCTAGCTAACATGGTAAATGCTGCAGCAATTTACGCTGCAAGTGAAGGAGACACAAATGTTACAACCAAGCATCTTGAATTTGCAAAAGACAAAATTATCATGGGCCCTGAACGAAAGAGTGCAGTCATTGAGGCTAAGAACAGGGAATTGGTGGCATATCATGAAGGTGGACATGCATTGGTGGCCCTGTACACTCCAGAAGCTTTGCCGATACACAAAGCAACCATTGTACCGCGAGGCCAGGCTTTGGGAATGgtttccCAGTTGCCTGAAAAGGACGAGTTAAACTGGTCTAAAGCCCAGCTGCTAGCAAGGCTTGATGTAGCAATGGGCGGCCGAGTAGCAGAAGAGCTTATCTTCGGCAAAGAAAACATAACAATGGGAGCTGCAAGTGATATGGAATCTTCAAATACCATCGCACGCGCCATGGTGTCAATGTACGGCATGAGTGACAAGGTTGGAATGGTCCAAGTGAAGGATGTTGAGAAATCGAGCCCTGAGCTACAGGCGCTGATTGAAAGCGAAGTCAAGCAACTTCTTAAGgattcATACGAGAGAGCCAAGACTATACTCCAGACGCATTCCAAGGAACATAACCGTTTAGCGGAAGCTCTGTTGAAGTACGAGACCCTTGACCTACAAGAAATCAAGCAGGTTATCCAAGGAAAACAGCTCTCTAGAAGTCTGTGACGCGACTTCACCAGCAGTGACAGTGAACTTTAGTACTAAAGCTATTTCGTCTCGCTCACTGACTGAGATCACTTTAAAGATTAGTCAAAAGGGTGATGTTTCTTGTACGTTTAAGAGCTCTTAGTTTCAGTGATCGAAATAGTCCGTTACGGTCACACGTATTTCTTAATTGGCATTATTTTAAAGCCCGAGGTTTGGGTTCTGTATTTTATTCAGTGTAAACCGTGTAAAGTTAACAGTTAGGCTACATTTACCCATCGCATGGGTCTTTCTTGTTCAGATCTTTACTCCCATCACCATTTGTCTTTTAGTAACAGTCCCCGATAAAAGTTTGAGACATGAAAGTTTCTGATCCCCAACACGCTAAATAGCGCTTGCCTTCGAGCGTTGTAACAATCATAGCAATCGAAGCTTAATGTCCTATTTTTTAGCAAGGCTCGCGATATAGTCAAAATTGAGTCTTTTAGGAGTTGGTTAGAcaacactccccccccccccacccccccccccctcctccccagcAGTTCTCTTTACATGTCTCGAAAAATTTGCAATGAACAGATCGGTTCGTAACGCAATCTTTCCTCTccaaagattgcgtgacgagcttGTTTATGGGGGAGCAATCTTCCGAGGCAcatgaaatttgattttggACTTACCGTAAGTTAGTTTGTAATCGAGATTTCACTTCgattaaacaaaactaaacaacaGGGAAATAAATGATATCTTGTACATCAGTCAAAACtatgaaatataaataaaatctCATTATCA

Protein

Uniprot

Uniprot term	Description
Q8LQJ9	ATP-dependent zinc metalloprotease FTSH 4, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=FTSH4 PE=3 SV=1
O80983	ATP-dependent zinc metalloprotease FTSH 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=FTSH4 PE=1 SV=2
Q96TA2	ATP-dependent zinc metalloprotease YME1L1 OS=Homo sapiens OX=9606 GN=YME1L1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF17862	AAA_lid_3	AAA+ lid domain	Domain	Interproscan
PF01434	Peptidase_M41	Peptidase family M41	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR037219	Homologous_superfamily	Peptidase M41-like	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR005936	Family	ATP-dependent zinc metalloprotease, FtsH	Interproscan
IPR041569	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR003960	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR000642	Domain	Peptidase M41	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23076	METALLOPROTEASE M41 FTSH	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004176	Molecular Function	ATP-dependent peptidase activity	Interproscan
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005743	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0006515	Biological Process	protein quality control for misfolded or incompletely synthesized proteins	Interproscan
GO:0007005	Biological Process	mitochondrion organization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08955	YME1; ATP-dependent metalloprotease	EC:3.4.24.-	Peptidases and inhibitors	ko01002	deepkoala