Gene detail

Detailed information of KAL9969297.1 in Oculina patagonica

Genomic Location: chr6:11103335...11120286
NR annotation: XP_020630799.1, protein MMS22-like isoform X2 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-ACROYT_G021496.t0

AGGACTCTTTGCCTTGTTGCTCATTTACAAAGAGAAGAATGTGGATTTTGGATACTTGGCCGAAAGGTTGTCCCACAGTTTTGCAAATATTGCAAGAGATTACATGGAGTCTTCTTCACGGGATAAAAGTCATCAGAAAAACTGCTGGCAGTTAATAACACTTTACTTGGACAGCTCACAGGATGTGTTTGAGCATAAAAACAAACAGGACTTGTCTGAGAGTAAACTCCTTGttgatgGATTTCAGTTTCTGTTTCGCTCGTGTCGTGATAATGAGCTGCGATACTTGCTGATGTTTGTCCAGACCACCCTCACGTCATTAACGCAAAACAGCAGACGAAAGACAGGATCTTCAGATGCTGTCAGTGTTCTGTGGAAGCACGTGTTTAGTCACGTGAGAGCTCTGGTGTCTGATGCACTTTGTGTCCAGTCTGCACCCAGTCACCTGGCCGACACTCTAGCCGCTTTTACTCTCTCTGCGCTCGACAGATACCCTGAGGAGGTTGCAGGTACAGCGGGCGTGTCATTTGCCAGTCTGCTCCGAGAGCTTGGTGTTAAAGACGAGATGTCTGCCAGCTTTTGTTGTCGATTCTTGTGTCACATTTTACCTTGCTCCGCTGCACTGACGGCAATTCAAGCAGAAAACATGGAAGGAGATATCATCCATACGTGGTTCAGATGTCTGTTGCAGCTTCCTTCTTCACACGAGGGGCTAACGGAACTCACAAGGGCAGTTGCAAAGCTACCTGAGATGGAGAAAATACAGAGGAGTCAGccTGGATTTGGAACTGGTGAGAGCAGCGAAACGTCGCTTCAACTTTTTATCGTTGCACTTGGCCGCTATCACTCTTCCCTGACCAAGTTTGACGAGTCAATCCAGTTTCGTGAGAAGGTTCAAAAATACCTTGGTGACGTGATGAAGTATGTTGATCATGTGATAAAAAATGCAGGACCCGCAGACCTGTTGCGGGTGGCGTATCACGTTGCTGGACTTCTGACAAAACATTGTTATAAAATCATTTACAGCAGGACTCAGCCCAGATGTTTGCTTCCTCGGTTAGTGGACCAATTCGCTCTTCCGTTACCGAACAGCAAGAAACCAGTAGCACCGCTGGTCATGCAGTGTATCAAGGCTCATTTACATCAGTTTCTTCAGGGACTTGCATGCCTGGACTTCAAGCGAGATGAGTTCATTCGGAGAAAAATCAAGCAAATATTCTTGTCGTATTTTCGGCTTTTTAACCAGATGTTGCAAACGTCTTCTCAGTCGGCCAATATTCCTACCAAGAATCCTTTTATGGTTGTTCTTAAAGGATCGTGTTTATCTAACCCAGTCCCCGACAGCAGCGAGTTTCGTCAGTTCACGATAGAGATCATCCAGGAGTCTTTCCTGTGCCTGCCACAACAGCCCGCAAATCTTACATCGACATTATACTTCTTGGAACAGCTGTTTAAAAGGACTCTTTGCCATTCTGAAAcagccagGAACACTCCTGTACTGCTAGAATCCATCACGTTTTGTTTACTGACGTGTAACCAGTTCACACCGGGAAATGAGCCACCCGAGATAAGAAGACAAGCAACTGAAATCCTACGTTTGATGCTTGAAGCGTGTAAGAAAACACCAGAAATAAACCCCAGAGATATTCTATTGCCTCATATAAGAGACTTCTTGTACAGCAAGATTACGCTATACCAGGGTTTGGTGTTTAAAACGTTCGAGACACTGGCTTCATTCGACCCAGACCTCTTAACTGCATTAATTCCCGCCTGTAAACAGGCCGTGGTACAGCTCGAGCAGAAGAGGGGAGTGGGGACTGATATGCAGTTAAGGTCATCATTTAAGTCATTCCTAAGTAAACTTGGACATAGCGGCGAAGTGGCGATCAGGGCTCTTGAACAAGATGATATGGCCATGGAGCATTAAAGAATGTCTAACGGAATTTAGCTCAGCCTCCTACCAAGTGAACAGTGTCTAATTGCTCTTCAAACGCCATCTGCTGAGTACCAAGCACAGTTTATGAAAGTTGAGAGAACGATCACTCGTATTGTTACAAGATAAGAGGAATCGGAGCGAGAATGATTGACAAAGTTGTACATACCCAttaccacaggcagaccaccctatgtgttcgtggtttaTAATTGTTCACAtaaggttatgttgaaatcaatggcgcatatagaagattTATAAAGAAG

Protein

Uniprot

Uniprot term	Description
E1BGH8	Protein MMS22-like OS=Bos taurus OX=9913 GN=MMS22L PE=3 SV=1
B3DIY3	Protein MMS22-like OS=Danio rerio OX=7955 GN=mms22l PE=2 SV=1
Q6ZRQ5	Protein MMS22-like OS=Homo sapiens OX=9606 GN=MMS22L PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14910	MMS22L_N	S-phase genomic integrity recombination mediator, N-terminal	Family	Interproscan
PF14911	MMS22L_C	S-phase genomic integrity recombination mediator, C-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR042320	Family	Protein MMS22-like	Interproscan
IPR029425	Domain	Protein MMS22-like, N-terminal	Interproscan
IPR029424	Domain	MMS22-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28547	PROTEIN MMS22-LIKE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0031297	Biological Process	replication fork processing	Interproscan
GO:0043596	Cellular Component	nuclear replication fork	Interproscan