Gene detail

Detailed information of KAL9970833.1 in Oculina patagonica

Genomic Location: chr6:30917478...30927375
NR annotation: XP_048585576.1, uncharacterized protein LOC5515075 isoform X1 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

ACROYT_G023280

ATGGGCAACCAAGTCAGTTCGTACAGGTTGGTGAATAGAGGCTGTCCCCAGGGCTCTGCCCTGGGGCCGTTACTATGGAACATTTTTCAGAACGACCTCCCCTTGTGCTTAGCAACCAGACCATCTATGTATGCTGACGATCATCAGATTTACCACAGTGGTCATGATCTAGGGGAGGTTACATCTAAGCTTAGTGAAAGTGCGGATCAGGCAACAAAGTGGTACGAGTCAAACTTGCTGGCCGGAAACCTAAAGAAATATCAGACGTTAAACATCGGCTGCAGCAAGACAACTGACTCAGGCACTAGTGCAGTGATCTATACTAACAATCAGAAAATTAAGACCGCAGATACTCTTAAGCTTTTAGGGGTAACTATTGACTCCAAACTGAAATTTTCGGAACACGTTAGCTCAGCCTGCATAAAGGCAAGTCAGAGAATCGGCGTACTAATGCGACTAAGGAACTTAATCCCCACTAAGGCCAAACTTCAGTTATACAAGTCAGCTGTACTACCATACCTTACTTATTGTCACCTAGTGTGGCACTTTTGTAGAGCTAGCGATGCACGCAAACTTGAACGACTACAGGAAAGGGGCTTGAGGGCCGTTTACAAGAACAAGCATGCTAGTTATACTGATCTACTGGAGAGAGCCAAGTTGCCAACGCTAGCGAACAGGCGTTTACAGGACATTTGTATTCTCATGTATAAAGTTAAACATAGATTATGTCCAAATAGCATCTGTAACATTTTTAACGAGCATAATTCCACGTATAACCTGAGACAATCAGATTTTTCTACTCCTAGATACAACACTGTTACTTATGGAAAGCACTCTTTGCGTTATGAAGGACCCAAACTATGGGGAAAACTTTCTACGGCTGACAGATCAGCCAAGACTCTGCAGGCTTTCACAAACCGTATTCGCAAAAAAGATATAACTCCCTTAATGGACAGCGGCTTTTTTAGCGTCGATGAAGAATTGAAGTTTGCAGGCAACATTGACTGCTTTGCATCAGTTAAGGGTAAACCAAATGAAAACACTTATGAAGTCTTCAAAAAAAGTTTCATGTTTAAAATGAACCCTGGCAAGAATCAAGCTGAAAAATTCAGATCACATACAGGAGATATGCCTCTTGAATGTAACCATTGTGGCAAGAATTTTAATCTGGCAGGACATCTGAAGGAACATAAAAGATCACACACAGGAGAGAAGCCTTTTGTGTGTAACCATTGTGGAAAGTGCTTTAGTCAGGCAGGGTCTCTAACGCGGCATAAGCGATTACATACTGGAGAGAAGCCTTTTGAATGCAAAGAGTGTGGCAGGCGTTTTAGTGACGTAGGAAATTTAAGGAAACATGTTAAAACACACACTGAAAAGAAGCCATTTGAATGTGATCAGTATAGCCAGCATTTCAAAAAGGAAGAGACTCTACCTGTAGCTGATTGTACAAGCACTCATACAGAAGAGAAGCATTTTGAATGTAACCAGTGTGGCAAGAATTTTCATCAGGCAGGGCGTCTGAAGGAACATCAAAGAGCACACACAGGAGAAAGGCCTTTTGTGTGTAAACAGTGTGGCAAGTGTTTTAGTCAGGCAGGCTCTCTAACGCGGCATAAGAGATTACATACTGGAGAGAAGCCTTTTGAATGCAAAGAGTGTGGCAAGCGTTTTAGTGACGTAGGAAATTTAAGGAAACATTTTAAAACACATACTGGAAAGAAACCATTTGAATGCGACAAATTTGGCCAGCATTTCAAAAAGGAAGAGACTCTACATGTAACGGATTGTACAAGCACTGATACAGACGAGAAGCATTTTGAATGCAACCAGTGTGGCAAGTGTTTTAATTGCGTAGGAGATCTAACGCAACTTAAAAGAACACACACAGGGGGGAAGCCTTTTGAATGCAACCAGTGTGGCAAGTGTTTTAGTCGGGCAGGACATCTGGAGGAACATAAAAGAAGACACACAGGAGAGAAGCCTTTTGTGTGTAACCAGTGTGGCAAGTGCTTTAGTAAGGCGGGGACTCTAACGCGGCATAAAATAACACACACAGGAGAGAAGCCTTTTGAATGTAACCCGAGTGAAGCCTTATCAATATGTACCTCATTCCTGTTCTACAAAAGTGGGTTAACCAGAATTCCAGTCCATGGAGGATTGGATAAAATACATCAATATAGAAGTATTCTCAATCTGAAACATTCCAGGCTGGAGAAATTGAAAATGTCTGTTGGAAGACCAAGGACCAAAGCTAAAAGACAAGACAGAAAGGCAGTATGGGTAGAAGAAAAGAGCAACTGCACTACTGAATACTAA

Transcript

rna-ACROYT_G023280.t0

ATGGGCAACCAAGTCAGTTCGTACAGGTTGGTGAATAGAGGCTGTCCCCAGGGCTCTGCCCTGGGGCCGTTACTATGGAACATTTTTCAGAACGACCTCCCCTTGTGCTTAGCAACCAGACCATCTATGTATGCTGACGATCATCAGATTTACCACAGTGGTCATGATCTAGGGGAGGTTACATCTAAGCTTAGTGAAAGTGCGGATCAGGCAACAAAGTGGTACGAGTCAAACTTGCTGGCCGGAAACCTAAAGAAATATCAGACGTTAAACATCGGCTGCAGCAAGACAACTGACTCAGGCACTAGTGCAGTGATCTATACTAACAATCAGAAAATTAAGACCGCAGATACTCTTAAGCTTTTAGGGGTAACTATTGACTCCAAACTGAAATTTTCGGAACACGTTAGCTCAGCCTGCATAAAGGCAAGTCAGAGAATCGGCGTACTAATGCGACTAAGGAACTTAATCCCCACTAAGGCCAAACTTCAGTTATACAAGTCAGCTGTACTACCATACCTTACTTATTGTCACCTAGTGTGGCACTTTTGTAGAGCTAGCGATGCACGCAAACTTGAACGACTACAGGAAAGGGGCTTGAGGGCCGTTTACAAGAACAAGCATGCTAGTTATACTGATCTACTGGAGAGAGCCAAGTTGCCAACGCTAGCGAACAGGCGTTTACAGGACATTTGTATTCTCATGTATAAAGTTAAACATAGATTATGTCCAAATAGCATCTGTAACATTTTTAACGAGCATAATTCCACGTATAACCTGAGACAATCAGATTTTTCTACTCCTAGATACAACACTGTTACTTATGGAAAGCACTCTTTGCGTTATGAAGGACCCAAACTATGGGGAAAACTTTCTACGGCTGACAGATCAGCCAAGACTCTGCAGGCTTTCACAAACCGTATTCGCAAAAAAGATATAACTCCCTTAATGGACAGCGGCTTTTTTAGCGTCGATGAAGAATTGAAGTTTGCAGGCAACATTGACTGCTTTGCATCAGTTAAGGGTAAACCAAATGAAAACACTTATGAAGTCTTCAAAAAAAGTTTCATGTTTAAAATGAACCCTGGCAAGAATCAAGCTGAAAAATTCAGATCACATACAGGAGATATGCCTCttgaatgtaaccattgtggCAAGAATTTTAATCTGGCAGGACATCTGAAGGAACATAAAAGatcacacacaggagagaagccttttgtgtGTAACCATTGTGGAAAGTGCTTTAGTCAGGCAGGGTCTCTAACGCGGCATAAGCGATTACAtactggagagaagccttttgaatgcaaagAGTGTGGCAGGCGTTTTAGTGACGTAGGAAATTTAAGGAAACATGTTAAAACACACACTGAAAAGAAGCCATTTGAATGTGATCAGTATAGCCAGCATTTCAAAAAGGAAGAGACTCTACCTGTAGCTGATTGTACAAGCACTCATACAGAAGAGAAgcattttgaatgtaaccagtgtggcaagaaTTTTCATCAGGCAGGGCGTCTGAAGGAACATCAAAGAGCACACACAGGAGAAAGGCCTTTTGTGtgtaaacagtgtggcaagtgttttagtcaggcaGGCTCTCTAACGCGGCATAAGAGATTACAtactggagagaagccttttgaatgcaaagAGTGTGGCAAGCGTTTTAGTGACGTAGGAAATTTaaggaaacattttaaaacacatACTGGAAAGAAACCATTTGAATGCGacaaatttggccagcatttcAAAAAGGAAGAGACTCTACATGTAACGGATTGTACAAGCACTGATACAGACGAGAAGCAttttgaatgcaaccagtgtggcaagtgttttaattgcGTAGGAGATCTAACGCAActtaaaagaacacacacaggggggaagccttttgaatgcaaccagtgtggcaagtgttttagtcggGCAGGACATCTGGAGGAACATAAAAGAagacacacaggagagaagccttttgtgtgtaaccagtgtggcaagtgctttagtaAGGCGGGGACTCTAACGCGGCATAAAataacacacacaggagagaagccttttgaatgtaacccgAGTGAAGCCTTATCAATATGTACCTCATTCCTGTTCTACAAAAGTGGGTTAACCAGAATTCCAGTCCATGGAGGATTGGATAAAATACATCAATATAGAAGTATTCTCAATCTGAAACATTCCAGGCTGGAGAAATTGAAAATGTCTGTTGGAAGACCAAGGACCAAAGCTAAAAGACAAGAcagaaaggcagtatgggtagaagaaaaGAGCAACTGCACTactgaatactaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR050752	Family	C2H2-type zinc-finger domain-containing protein	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24384	FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09228	KRAB; KRAB domain-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala