Gene detail

Detailed information of KAL9971057.1 in Oculina patagonica

Genomic Location: chr6:33861308...33878186
NR annotation: XP_020630562.1, msx2-interacting protein-like isoform X1 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ACROYT_G023541

ATGGTGCGTGAAACGCGCCATTTGTGGGTCGGAAACCTTCCGGAAAACATCAGAGAAGAAGAAATTGTCAAGCACTTCACACGGTATGGCCGAGTCGAAAGCGTCAAAATATTACCAAAACGGAGCCAGGAAGGTGGAAGGGCTGCTTTTGTGGATTTTGTAGATATTCGAAGCGCTACAAAAGCGCATGAATCTGTGAACAGAATCGGTGACCGCGAAATGCGAACCGACTACAACGAACCAGGCAATGCGGGAAGTCTGTCCCGACTGCACGGGCATACGGACCCGCCGGCGAGAACTACGAGTAATTCGGCTCCTGGATCGCCGGTCCAAAGACGGCGATTTGATAGACGAACAGAGGGCAGTGCTTCTGACGGGAGGTACAGTGGGCGGTCGCAGACTTTCTACCAAGATGCTTATAGTGATGATGAGGGTGCAGCCCCAAGGGTAGCAAGCGGAGGAGGAAGTGGAAGTGGAGGCAGTGTAAACAGAGCCAGACCTCGTAGCGGTAGAGATCATCGAAGGCAGCCCTACAGTCATGGTCAAGAACCTCGTAGAAGTACTCATAAACCTGAAGCGTATCGTGATCAAGATCCCAGTCCAGATCACTCCAGCGGTAGTGAAAGTGGTAGTGAAAGTAGCCGCAGTAGGAGTCAGTCCCCCAGTTCCAGTGGCAGCAGTAGCAGTGAGGAGGGCAGTAGAGGTGAAAGTGTTCATGCAACTGCTCCATCTTCAGAAGCCCCACCAAGCACAAACAGAACTTCAGCACTCTGTTTGAGGAATATTTCATTGCGATCAGGAGATGGCAGTCTCCGTGATGGCCTTTACCATGAGTTTAAAAAGCATGGGGATGTGTCTCGTATATTTGTGAATGGCCAGGGCTCCAGCAGATATGCTATTGTTCACTTTAGAAGACCTGAAGATGCTGAGCGAGCTCTTGAAGCGTGCCGTGGAAAGATGTTTCTAGGAGCAGAGATGGATCTGCAATATTCACAAGATGATCGTTATGAGAGCAGTGATCATCCTCCACGCCATCGCTCGCATGCCAGTTCCATGGTGGATGATGAGTTTGATCCTGGTTGTACTCGAACTCTTTTTGTGGGAAACATTGAAAAGACGACGACTTTTTCTGATCTTAAGGAGGCATTTGAGAGATATGGAGAAATTGTGGATGTGGATATTAAGAAACAGGCTGGTAACAATCCATATGCCTTTATCCAGTTTGTTGACCTCAGCAGTGCTATCCAGGCACGTAGGCGCATGGACAGAGAATTTGTAGGACGCAACAGAGTCAAGGTTGGGTTCGGCAAGGTGTCGCCCATCAACACCATCTGGGTGGGAGGATTGAGTGGACTGAACGACCAGCAGATCGAGAGACACTTCAGTCGATATGGGCGTGTCACCAGGGTGGTGGTGAACCGCCCCAGAGAACAGGCCCTGGTCAGTTTTGACAGCGTTGAGTCTGCTAGCATCGCTCAGGGAGAAATGAAGGGCAGGTCGATGTTTGGACGGCGTGTGAGGGTTGAGTTTGTCAGCCGTGACAGTCGCCAACTCTTCTTCGACGCACTGCAGCGCTCCGCTCCGTCTGATGGTAGCAGCAGCAGTAGCCGAAGATACGAGCCTTCATCTCCGAGATCCCGAGGCCGAGGAGGCGGGTATTACGATAACCGGTGGGAAGGGCGAGGCCGAGGAGGAGGGCGTGGTAACATGAGACGGGACATGTCAAATCAACGACCCTGGCAAAGAGGAGGTGGCGAGTATGAATATTCTGAGGGCGGCGGTTACAAGAGAGGGCATGGGCGTTACCGTCAGCCTTACGAAGGGGGTGGGTACGAGTCGGATGATTACGATCAGGAGCTTCGGGATTATAAATACAGTCAGCAAAGGGAGAGAGAAAAAGAGCAAGGCCGACAGAGACATGACAGAAGTGGCCGTGATAGGGACAGAGAAGACGGAAATTACAGCGGAAATGAACGATTCTATCCCGAAAATCAGGAACGCTGGCGAGAAGATAGGAGCAGCTCGGACTCGTACGAGGAATCACGTGCTCGGAAAGACGCTCGACCTCGGGAAGTGCCCGACGAATATGACCGAGAGAGAGCTGGTTACAGCGAAGACGACGACCATGCGTCGTTACACAGTAAACCGTCAAGTCGCGACATCGAGCAAGACGAGAAACGTGTGAAGAGGAAAGAGAAAAGAAAGAGAAAACCCCGGTCGCCATCTCCCGAGGGTGAGGCTGTTGAAGGCAAAGAAGCGCTCAGCGACGGCGAAGAAACAGAGGAGAAAAGAGTCTTTGAGGAGAAGAAAACGAGAAAAATTAAAAGCGGAGAGGCGGAGATTGCACTGAAGGATAAAGAGGCAGAAGCTGAGGAACGCGTTTGGGACGAGCGGCGGGTGCACGGTAATGGTACCAAAACTGAAGAAATCGGTGTTAAAGATGGCGAGAAAGAACTCGCTCCAGCCTCGCCTCCGCAAGAGAAAGGCATCAAAAAGAAGGAGAAAAAGGACGCAAAGAAACGGAAGAAACACAAACGTATTCGAGGCTCGTTAGGCGAAGAAGAAGAGGAACGGGAGCTGGAGGAGGAGACTGCTCGTATGGAGGAAGCCGCTGGTCAGGAGGCGGTAGCTGACTTAGCCATGCCGGTAAATAAAACAAGGGTCAGTTCTGATACTGACTTGCAGAGACTTGAAAACAGAGACACTGCTGTCCCTGAAAATAACAGGCTTGATCGGGCTGAATTTGAAAATGAGAAACTACCGAGACGGCATTCTTCTGACGAAAGGCTTCGCAAGGAAGAACGAGAATTTTCACGCGAATCTGTGAATCGTTCGCCTCGTAAGTCGCACAGAGACGAGCGGAGAGGAGACTGGGAAAAGACGGATGTTGTGAAGGCGAAACGGCGACGGACATCTGAAGGTGAATCGCCACCCCCTCCCCCTCCACCCCCACCTCCTCCTCGAGAGGCTGTAGAAGGCTATCTCCCCCCGGAGATGTTACCGAGAGTTGGTCCACCGCCAGACGGGCTCCCTGCACAGATGGTCCGGCCACCTTATGACATGGCTCCCGCGCCGCCAGTACGTTACGAGCCACCGATTTACGACGGGAGCCGTACCGTGCCCGTGGTTGCCTCTCCTGCTGCCACGCTCAGCCCTGTACCACCAGCTGGGATACCTCTGAACCCTGTGGTCGTGGTTCCACCCAACGTTTCCACTCCGCCGCTAGCAGTTCACTCACCGGGTGTCCCTCTCGGTGTACCCGCAGTACCAACCTTGGCATCTCCCCAAGGATTACCCCCTCCTCCCCCACCACACCCAGATTACACCCCACCCCCTGTACAGCAGCCAAACACCGACACCCTTCTGGACCTTCTGCGCCGGTATCCAGTGGTCTGGCAGGGCCTGCTTGCCCTGAAGAATGATTCCGCTGCAGTTCAGATGCATTACTTGGCGGGTAACGGCCGCCTGGCAGAGGTATCGCTACCTCAGGCGCCCGCCAATGGGATAGGAGGCGTGCCCCCGCCCATCAGGATCGCTCAGCGGATGAAGCTGGAACCATCACAGCTAGAGGGAGTCATAAGGAGAATGCAATCCGACAAAGATCACTGTCTTTTGCTGGCTCTCCCGTGCGGCAGAGATCCTCTCGACGTTCACAAGCAGACACGCGCCTTGAAGAGTGGCTTTATTAACTACTTACAGATAAAGCAGGCAGCGGGGATCATTAATGTGGCCAGGCCAGGAAGCGCACAGCCAAGCTACGTTCTCCACATTTTTCCGCCGTGTGATTTCGCCCACGAGCACTTGGCACGAGTCTCCCCAGACCTCCTGGACAGTGCGGCCGACAGCGGGCACCTCATGGTCGTGGTGGCTTCCGTGTAG

Transcript

rna-ACROYT_G023541.t0

TGTGAATTTCGAAAGTTGTTGGAAAATGTGTATTTTTACGGCTGTTTTGAGTACCAGAACGAACCGGATAGCATTTACCAAGTAGGAAGGAATATTCATAAACAAGATGGTGCGTGAAACGCGCCATTTGTGGGTCGGAAACCTTCCGGAAAACATCAGAGAAGAAGAAATTGTCAAGCACTTCACACGGTATGGCCGAGTCGAAAGCGTCAAAATATTACCAAAACGGAGCCAGGAAGGTGGAAGGGCTGCTTTTGTGGATTTTGTAGATATTCGAAGCGCTACAAAAGCGCATGAATCTGTGAACAGAATCGGTGACCGCGAAATGCGAACCGACTACAACGAACCAGGCAATGCGGGAAGTCTGTCCCGACTGCACGGGCATACGGACCCGCCGGCGAGAACTACGAGTAATTCGGCTCCTGGATCGCCGGTCCAAAGACGGCGATTTGATAGACGAACAGAGGGCAGTGCTTCTGACGGGAGGTACAGTGGGCGGTCGCAGACTTTCTACCAAGATGCTTATAGTGATGATGAGGGTGCAGCCCCAAGGGTAGCAAGCGGAGGAGGAAGTGGAAGTGGAGGCAGTGTAAACAGAGCCAGACCTCGTAGCGGTAGAGATCATCGAAGGCAGCCCTACAGTCATGGTCAAGAACCTCGTAGAAGTACTCATAAACCTGAAGCGTATCGTGATCAAGATCCCAGTCCAGATCACTCCAGCGGTAGTGAAAGTGGTAGTGAAAGTAGCCGCAGTAGGAGTCAGTCCCCCAGTTCCAGtggcagcagtagcagtgaggAGGGCAGTAGAGGTGAAAGTGTTCATGCAACTGCTCCATCTTCAGAAGCCCCACCAAGCACAAACAGAACTTCAGCACTCTGTTTGAGGAATATTTCATTGCGATCAGGAGATGGCAGTCTCCGTGATGGCCTTTACCATGAGTTTAAAAAGCATGGGGATGTGTCTCGTATATTTGTGAATGGCCAGGGCTCCAGCAGATATGCTATTGTTCACTTTAGAAGaCCTGAAGATGCTGAGCGAGCTCTTGAAGCGTGCCGTGGAAAGATGTTTCTAGGAGCAGAGATGGATCTGCAATATTCACAAGatgATCGTTATGAGAGCAGTGATCATCCTCCACGCCATCGCTCGCATGCCAGTTCCATGGTGGATGATGAGTTTGATCCTGGTTGTACTCGAACTCTTTTTGTGGGAAACATTGAAAAGACGACGACTTTTTCTGATCTTAAGGAGGCATTTGAGAGATATGGAGAAATTGTGGATGTGGATATTAAGAAACAGGCTGGTAACAATCCATATGCCTTTATCCAGTTTGTTGACCTCAGCAGTGCTATCCAGGCACGTAGGCGCATGGACAGAGAATTTGTAGGACGCAACAGAGTCAAGGTTGGGTTCGGCAAGGTGTCGCCCATCAACACCATCTGGGTGGGAGGATTGAGTGGACTGAACGACCAGCAGATCGAGAGACACTTCAGTCGATATGGGCGTGTCACCAGGGTGGTGGTGAACCGCCCCAGAGAACAGGCCCTGGTCAGTTTTGACAGCGTTGAGTCTGCTAGCATCGCTCAGGGAGAAATGAAGGGCAGGTCGATGTTTGGACGGCGTGTGAGGGTTGAGTTTGTCAGCCGTGACAGTCGCCAACTCTTCTTCGACGCACTGCAGCGCTCCGCTCCGTCTGAtggtagcagcagcagtagccgAAGATACGAGCCTTCATCTCCGAGATCCCGAGGCCGAGGAGGCGGGTATTACGATAACCGGTGGGAAGGGCGAGGCCGAGGAGGAGGGCGTGGTAACATGAGACGGGACATGTCAAATCAACGACCCTGGCAAAGAGGAGGTGGCGAGTATGAATATTCTGAGGGCGGCGGTTACAAGAGAGGGCATGGGCGTTACCGTCAGCCTTACGAAGGGGGTGGGTACGAGTCGGATGATTACGATCAGGAGCTTCGGGattataaatacagtcagcaaAGGGAGAGAGAAAAAGAGCAAGGCCGACAGAGACATGACAGAAGTGGCCGTGATAGGGACAGAGAAGACGGAAATTACAGCGGAAATGAACGATTCTATCCcgaaaatcaggaacgctggcGAGAAGATAGGAGCAGCTCGGACTCGTACGAGGAATCACGTGCTCGGAAAGACGCTCGACCTCGGGAAGTGCCCGACGAATATGACCGAGAGAGAGCTGGTTACAGCGAAGACGACGACCATGCGTCGTTACACAGTAAACCGTCAAGTCGCGACATCGAGCAAGACGAGAAACGTGTgaagaggaaagagaaaagaaagagaaaacccCGGTCGCCATCTCCCGAGGGTGAGGCTGTTGAAGGCAAAGAAGCGCTCAGCGACGGCGAAGAAACAGAGGAGAAAAGAGTCTTTGAGGAGAAGAAAACGAGAAAAATTAAAAGCGGAGAGGCGGAGATTGCACTGAAGGATAAAGAGGCAGAAGCTGAGGAACGCGTTTGGGACGAGCGGCGGGTGCACGGTAATGGTACCAAAACTGAAGAAATCGGTGTTAAAGATGGCGAGAAAGAACTCGCTCCAGCCTCGCCTCCGCAAGAGAAAGGCATcaaaaagaaggagaaaaagGACGCAAAGAAACGGAAGAAACACAAACGTATTCGAGGCTCGTTAGGCGAAGAAGAAGAGGAACGGGAGCTGGAGGAGGAGACTGCTCGTATGGAGGAAGCCGCTGGTCAGGAGGCGGTAGCTGACTTAGCCATGCCGGTAAATAAAACAAGGGTCAGTTCTGATACTGACTTGCAGAGACTTGAAAACAGAGACACTGCTGTCCCTGAAAATAACAGGCTTGATCGGGCTGAATTTGAAAATGAGAAACTACCGAGACGGCATTCTTCTGACGAAAGGCTTCGCAAGGAAGAACGAGAATTTTCACGCGAATCTGTGAATCGTTCGCCTCGTAAGTCGCACAGAGACGAGCGGAGAGGAGACTGGGAAAAGACGGATGTTGTGAAGGCGAAACGGCGACGGACATCTGAAGGTGAATcgccaccccctccccctccacccCCACCTCCTCCTCGAGAGGCTGTAGAAGGCTATCTCCCCCCGGAGATGTTACCGAGAGTTGGTCCACCGCCAGACGGGCTCCCTGCACAGATGGTCCGGCCACCTTATGACATGGCTCCCGCGCCGCCAGTACGTTACGAGCCACCGATTTACGACGGGAGCCGTACCGTGCCCGTGGTTGCCTCTCCTGCTGCCACGCTCAGCCCTGTACCACCAGCTGGGATACCTCTGAACCCTGTGGTCGTGGTTCCACCCAACGTTTCCACTCCGCCGCTAGCAGTTCACTCACCGGGTGTCCCTCTCGGTGTACCCGCAGTACCAACCTTGGCATCTCCCCAAGGATtaccccctcctcccccaccACACCCAGATTACACCCCACCCCCTGTACAGCAGCCAAACACCGACACCCTTCTGGACCTTCTGCGCCGGTATCCAGTGGTCTGGCAGGGCCTGCTTGCCCTGAAGAATGATTCCGCTGCAGTTCAGATGCATTACTTGGCGGGTAACGGCCGCCTGGCAGAGGTATCGCTACCTCAGGCGCCCGCCAATGGGATAGGAGGCGTGCCCCCGCCCATCAGGATCGCTCAGCGGATGAAGCTGGAACCATCACAGCTAGAGGGAGTCATAAGGAGAATGCAATCCGACAAAGATCACTGTCTTTTGCTGGCTCTCCCGTGCGGCAGAGATCCTCTCGACGTTCACAAGCAGACACGCGCCTTGAAGAGTGGCTTTATTAACTACTTACAGATAAAGCAGGCAGCGGGGATCATTAATGTGGCCAGGCCAGGAAGCGCACAGCCAAGCTACGTTCTCCACATTTTTCCGCCGTGTGATTTCGCCCACGAGCACTTGGCACGAGTCTCCCCAGACCTCCTGGACAGTGCGGCCGACAGCGGGCACCTCATGGTCGTGGTGGCTTCCGTGTAGATGTACGGACGATTCCAATACAAGAATAGCTTGTTTGCGGGAAATAGAATACATCATCTCTTCTGAGTCGAGAAGAATTGCAATAGGAAAAATAGCTGAGGCTTTACGCCGTAGTGGATCGAACCTGTGAGCTCAGGGGAAATATCGgattgtttagttttgtttataaGTAGAGGACTTATTGACTGGAGAGGTGTGATATCTTTACTCTGATTGGCCAGAGGAGCAGAGACAGTGTTGTCAAATATAGCATCACGCCCGGAACGGGACAGAAACTCGCGTGTTTGTCACGTTACACGCGTGTCTTCTGAAAAACTTTGCGAGGACTTCATAACGTGGCCCATAGTCCCTGAAAAAGGGCCGTGAATTTGGGCAGCTAGAATTACAATcgatttttaatttgaaagtacATAATTAATGCTGACGTAGCGAGTACAACAAAATTTAGTAGAATTATATTTTCTTAGTCTTTACTTTAACTTGCTGTTTCGACTTGTTTAAGTTTTAGTCTTAGGACAGTGTGTGTTAATAGTGAATTAGTGGCCCAAGGCTGAAAACTGTCATGAGGCTGGAATAATTGTCCGAGGCACGACATTTTAAGTAATAGTTTTAAAGCGAAGGGTTTCTATTTAGACGATAAAAACCTTTGTTATCGCGTTCTTTAAGAATTGTCCCACTGTCGTTTTCTGATCAAACGATGGTCACGTGCTTTTAGATGTCATTTATCGTATGAGTACTTCTTATTGGTCCGTAGCACGTGAACCGTTCATGATACGCATGCGTTTTTCTACTGCAGTTTTTTCCCAGTCGAGAGGTACCACGTGCCTTAATTTTGACCAATGAGTGACAGCAAGTTTCTTAGTGCTTTGAAACACACGGATCAAATTGAAGTTCAGTGAGTTTTTCCAGGTGTAAGTAAATTCATACACGATAAAATTTGAAGAACGTAGTTATTCATATATAGGGAAATTTGCAGATTAACTTGATTTTCGTCTTGTATTGCTTTGCTAGAAAATTTAAAGCTTGGTCTGTAAACCGTACCAGATTCGCATTCACGGTGTGAAATACGGTAGTTGCTTAGCGAGATCTTCAGAAGGACGTTTTATTCATGCGTTAATGTTAAATATTGTTAGTGACGTCCATGAGACTTCGTGAACACGACAAATGTCTGTTTTCACAATGAAGACATTCTGCTACCGTAAACCTACGAtaatactcccccccccccccccgaataaTAACTTGAATCCCCGGATGCTAGCAGCCATCCACTGTAGTACTACTTTTATATCCCTCCCCTCACCACGTAAGGTCGTTGAAGTATTTTCAGAGGCCTTTAAAGCTCAGTTAACTATCGGCAGGCggcagttttgtttttgttgttttggagtTTTTTTAATGATCCTTGCAcctaaaacttttttttcgtCGGATAAATAAGCCACaccctaaaaaaaaatcacactgaAAAACCCTTTGGAACAAAAGTAAGCCCAGGATTTATTGTTTCAGATTGtaagaattttacggtatctaaTCAGCACTGTGAGAAGAAATTTGCAAATAATCGAATTTATTGTATAGATGCATCCACAAAGGTTAAATCTGTGGACGCTGCTGTCGTTTTAGAATTAACCCGGTCGATCTTGTAggtatattttaaattattgaTAGTAAGAGGAATAAAACAAGATCATGGTA

Protein

Uniprot

Uniprot term	Description
Q96T58	Msx2-interacting protein OS=Homo sapiens OX=9606 GN=SPEN PE=1 SV=1
Q62504	Msx2-interacting protein OS=Mus musculus OX=10090 GN=Spen PE=1 SV=2
Q8SX83	Protein split ends OS=Drosophila melanogaster OX=7227 GN=spen PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF07744	SPOC	SPOC domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012921	Domain	Spen paralogue and orthologue SPOC, C-terminal	Interproscan
IPR016194	Homologous_superfamily	SPOC-like, C-terminal domain superfamily	Interproscan
IPR010912	Domain	Spen paralogue/orthologue C-terminal, metazoa	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR034174	Domain	SHARP, RNA recognition motif 3	Interproscan
IPR034172	Domain	SHARP, RNA recognition motif 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23189	RNA RECOGNITION MOTIF-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan