Gene detail

Detailed information of KAL9971419.1 in Oculina patagonica

Genomic Location: chr6:38217801...38223877
NR annotation: KAJ7393601.1, Y-box-binding protein 2 [Desmophyllum pertusum]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
P41824	Y-box factor homolog OS=Aplysia californica OX=6500 PE=2 SV=1
Q00436	B box-binding protein OS=Xenopus laevis OX=8355 PE=2 SV=1
P21573	Y-box-binding protein 1 OS=Xenopus laevis OX=8355 GN=ybx1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00313	CSD	'Cold-shock' DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002059	Domain	Cold-shock protein, DNA-binding	Interproscan
IPR050181	Family	Cold shock domain-containing protein	Interproscan
IPR019844	Domain	Cold-shock (CSD) domain	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR011129	Domain	Cold shock domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11544	COLD SHOCK DOMAIN CONTAINING PROTEINS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03704	cspA; cold shock protein	-	Transcription	-	deepkoala