Gene detail

Detailed information of KAL9971911.1 in Oculina patagonica

Genomic Location: chr5:5368844...5372073
NR annotation: XP_020612003.1, protein lin-41-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-ACROYT_G018133.t0

ATGCTAACAATACCACATTCCAAGTCTGGAACGAAAGAGCCCGAAAACGAGAAGAAAATCTACGCTTTAGCGCCATACATCAAAGGAATTTCTGAACGCCTTCAAAGAGCGTTTAAGTCACACGAGGTCACACTTATTCATAAACCCGTAAATTCCCTGAGGTCGCAATTGGTACATGTCAAAGACAAAACGTCCAATCTAAAGAAATGCGGAACTGTGTACCAGGTTCAATGTGAACAGTGCAACAAGGAGTACGTTGGCGAAACGTCCCGTTTACTGgaaaccagaatgaaagaacatcagtcgaggaactcgtcagccattcatgaacattgtcgactggagggccactcggtagacacaagcaagacaaaagtgttagccaccgaaatcaacacctttaaacgccgggtaaaagaggccattgagataaaactcagaaaacctttgttaaatagagacaatggtGAACTGCTTCGTCCAATCTTACCCGTTTACAGCAAGAACGACAAACGACCCGAGCTCAGCGCAGTGGCTTTTGACATTCTGGGAAATATCTACGCCGCTGACAAAGCGAACCACAGAATACAAAAGTTTACATTCGATGGGAACTTTCTTTGCTTCATTGGAGGACTTCACGACCTACATTGCCCCATGGGGATTGTTGTCAAGAAAAACGGTGACGTCATCGTCACTGAATACGAAAATCACCGACTCAAAATCTTCAGCCAAGAGAACCTAGGGGAGAGTAAAATCATCGGCGCAAGGGGGGTAGGGGCAGGCAAGTTTGCCTGCCCAAGAGGGGTGGCGCTTGATCACAATGACAATATTTTGGTGGCAGATAGTCAGAATCACAGAATTCAAGTGGTTTCTTCGATAGGCGAACCTCTTGGGACATTCGGAATGATTGGTTCAGATCCCGGATGTCTTGATACCCCGTATGACGTTGTCATGGATGCATCCGGGAACATTATTGTAGCTGATGCTAAGAATCATAGATTGCAGGTTTTTACGAGGCTTATCCCTGTATATGCTGAGCCTGCGATGTACGATGAAGAGTACGAAGCTGCGGTTGCGACAGTTGATGGGGAAGGACTGGAAATGAATAAAGATGAAATTGCGGCGGACAATTTGGACGACGGGGTTCAACATGGGATTAACGATGTCGTTGAAACCAATGAAACCCCCATGAAGGTCACCATCCAGGAAAACAACGAAGAAGAACAAAATCGAAATACAGGGACTGATAAATTGCAAGTTTTAGAGGAGTCTAACAACACAGGAATTGCAAACAGTGAAGAATCTACAAAACAAGTTTCCAAAGACACCCAAGAGAtggaaattaataataattaacaattattcaccaaagtggaggtaaatatccaccacattcactgacgctgaggtgaataattgttttagtatatactacaCAAGATGAATAtctagcggaccaaaacatcactttcggtaaaaaaaaaagcgacacacgaaggcagtttgtttctctttagctgctcggaggtgaataaaacattgctaatcacctccgagttaaccaatcagcgcacgcgaaaagcactattcacttgtgtggtatatactaacaACATATGACGAAATCAGAATGAGATTGAAAAtcggaggcgtttattagaaaAACTGACAATTATGTTATTGCTGGAATTGTTTTTGACAGGTTCAAGTCATGCTGTAATTTTCAGACTCTCTAGTTCTCGGTACTGGATGATGAGTCCAAAGAAACGCTTTCAATGAATTGTAAGTAACCTGGGTTTGACATTATAATGTGCCTCGTGTTTACTACAGAGTGGAACCGTTAAATTTATAACTCTGAAAATCCTCCGCGTTTTACTTGGGCTGAAAATCTATGTATTTCTCGAGACGACTCTTTTTTCAGTTAGAAATAACTAGCTCAGATTCGCCAGAATAAACCTGCATTTTATGGACTACATTTTGTTTCCTTGGGAAAACTTCGTTATGATacaaacaataaataattacCATAAGTCCGTGTTGTTAATTGTGTGCTTCCTTTCCGATGCGCTCATGTATTTTACGGAATCTGTTTCTCCTGTTATAAGTTCCCCGCGAAAGCTTGttttcacttcattttttaCTAGTTTTGCTATGGCGATCACTCTGCTTCATTTTCAACCGCGTCTTTATTTTCTGATTCATTCTCCGTGATTGCCAGCCATGGTTCTTGTTGTAGCTGTTCTACTGTTATTCTCTCGGCTAAATTCCACTGTAGCATTTTATGTATGACAGCTTTGACTGGGTCAGGAACGTTAACCTTAGAAGGGAAATTGACCCGGCGATGGACTTGTTGTAGAAGACTGCGTAAATTGGAGTCATCGAACGGCAATCGGCCACAAATCATGGTGTAAAGAATCACACCCATGCTCCACACGTCCGCGAGCGTTGCGTCATAAGCAATACCTACATAGATGACAAtaaatatgggttattgactATAAGCGTGAGGATCAAGATGGTGGGATAGTAGATAAGTTCTTTtcttttgcgtgtttatggacctagACAAAgtcgaacaagcttggtcaataaacaagcgagtaagaccCTGCATTATACTAAGTTAACCTAAACAGGGTCTTACATCAATGGTT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01541	GIY-YIG	GIY-YIG catalytic domain	Domain	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR000305	Domain	GIY-YIG endonuclease	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR050952	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02987	RP-S4e, RPS4; small subunit ribosomal protein S4e	-	Ribosome	ko03011	deepkoala