Gene detail

Detailed information of KAL9972282.1 in Oculina patagonica

Genomic Location: chr5:10203162...10226927
NR annotation: KAJ7377512.1, hypothetical protein OS493_028495 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

ACROYT_G018565

ATGGCGGCATCGTCGCTGGAGTGTATCAGGGCGCTCCTTGTTTGTGGCCTCATCTCTTGTGCTTTTCTTGTTTTAACGGCTCCAGGTGCTGGGGCGCTGAAATTTCTCAATCCACCAGCCATTGTATTGCAGGGCTTCTTGGGCTTAAACATCGATATAAACTGCACAACTGATAATCCAAATGCTACAGTCTCCCTCTTGCACACCAAAAATTTCGTAACTTGGACTGAAAGAACTGTCGAGCCAAATAAACTAATTTTGAATGGACAAGTTTTCACCCTGCTGTACCTAGTTGTTGGTGATGGTGGAAGGTATAACTGCAAAGCAACAGCTGGAAGCCAAACTATTCGCTGGCCAATGTCCTCTGGCTACATGATACTTCAGTCAGGAGCATTGCCAAAGCATTTCCAATTGGTCCCTAACATTGCACTGATTCTGTTGCGAGGAGGAGATGGACAAATTTTGTGTGAAGCTCAAGGTACCACAGTTAGCAAGCTTCAGTGGAAAAAGATAACTGCCTCAGGAGAGGAAAATGTCCCAGACAGTAAGGTCACTAATGCTGTTGATACGACCAAAAATTTAGTGAAGGCTATTCTAAAGATTACAAATGCTCAAACCCAAGATGCTGGTGAATACAAATGTGGGCGCACAAAAAATAGTAGACCTCCAAAATCCGATGTACACTGGTACAGGAATGGCAGGAAGTTAGATGTCACAAAGTGTACAGGTCCAGATGACAAAAGCTGCGAAAAGATTATCTATGAGGTTTATGAAGTAAATGTAAAACCAGCATTACATACCACTTTCACTGAACAAGTTCTTAAAATACGCAGTGCAGTGTATCCCAGAGATCACGGGAAGTTTGAGTGTATAGCAACGAATGGTGTTGATCCATCTGCTAAGTTGGCTTTTGATCTGGATGTGCAAGCTGCACCAGTACTTAACAAAAGGTCAGATACAGTGTTAGCTATTGACGGCGCGGGAGCAGAGGTGTCTTGCTTAGTAGACAAGAGCAACCCCTTGCCGACATTCACATGGCAATACCAAAATTTGGATTGTCCAGATGCTGATTCCTGTCTGCCAGATGAAAATCAGTGGAAATCTGTTCCTGGAAATCTGATGATCACCCCCACAAACACACCAACAAATAAAAGTGTGGTGCAAGTTGAAAAAGACCAGCTAGCATCTTTCTATCGGTGCAAAGCAGTGAACACTGTAGGAAATGATGCTTTTGTCATCAAACTTGTTCGCCTTGCAAAAGCCAAGAAATTGACAGAGTTTGACGCCAACAGTAAAACACAGTTTAATGAAGAGTCTACCTTGCGACTTGTCTGCTTTGACCGGTGTGGTATATTCTGCCCTGTTGCTCACTTCACAAAAGGTGGCGAAAAACTTTCCCATGAAAATGATGCACGTGTGAATGTCACAATATCACAGAGTCCAACATCTGCGGAAAACAGGCTTGTGTTAACCGTCAAGAACTTGACGCTGAATGATTCAGAAAGCTACAGATGTGTATCAAGTGCCAAGCCAGACAAATATGACGAAGTCAATGTCACCATTCACAGTATAGGAAGCGTTAATCCATGTCATGGGAGCTCCTGCTACTTTATTTCGACCGCAGAAGAAGGGCGCTCATGGAATAACAACCGAAACACGTGTCAAGACAAAGGTGGTGACCTAGTTTCCATAGAAACCTTAGCGGAATGGCAGTTTATTAACGGAGAGATTCAAAAGAAATATATTGGAGTACCCAATGAATGGCATATTGGTTTGCATAAGGTGGGAGGAGTTTGGAAGTGGATAAATAATAGCCCATTTAGCCTAGCAAGCAAATGGCAATCGTCACATGGAGAGCCTTCTGGTGACGGAGATGTGGCTGTCATATCAAAGGATTACCCGCCCACTCATCAAGGCGAATTTAATGACCTTGCAAGGACGCGAAAGAGAGCTTTTATTTGCGAGTTATCCACAGCTACCGGAGGAGATACGGGAGGAAGTCCGGGACGGTGA

Transcript

rna-ACROYT_G018565.t0

GAAGAACAAGAACGCGCTGAATTGCgagaatttttaaaaagaaaaaacgacttattcttaaaaagaaaattcagaGCTAATCAGTTAGTAATTATTCTGTGAAATATCGACgcgaagaaaggaaaagaaccGCCTTcgttccgccattttgtttaaaaatggcGGCATCGTCGCTGGAGTGTATCAGGGCGCTCCTTGTTTGTGGCCTCATCTCTTgtgcttttcttgttttaacgGCTCCAGGTGCTGGGGCGCTGAAATTTCTCAATCCACCAGCCATTGTATTGCAGGGCTTCTTGGGCTTAAACATCGATATAAACTGCACAACTGATAATCCAAATGCTACAGTCTCCCTCTTGCACACCAAAAATTTCGTAACTTGGACTGAAAGAACTGTCGAGCCAAATAAACTAATTTTGAATGGACAAGTTTTCACCCTGCTGTACCTAGTTGTTGGTGATGGTGGAAGGTATAACTGCAAAGCAACAGCTGGAAGCCAAACTATTCGCTGGCCAATGTCCTCTGGCTACATGATACTTCAGTCAGGAGCATTGCCAAAGCATTTCCAATTGGTCCCTAACATTGCACTGATTCTGTTGCGAGGAGGAGATGGACAAATTTTGTGTGAAGCTCAAGGTACCACAGTTAGCAAGCTTCAGTGGAAAAAGATAACTGCCTCAGGAGAGGAAAATGTCCCAGACAGTAAGGTCACTAATGCTGTTGATACGACCAAAAATTTAGTGAAGGCTATTCTAAAGATTACAAATGCTCAAACCCAAGATGCTGGTGAATACAAATGTggGCGCACAAAAAATAGTAGACCTCCAAAATCCGATGTACACTGGTACAGGAATGGCAGGAAGTTAGATGTCACAAAGTGTACAGGTCCAGATGACAAAAGCTGCGAAAAGATTATCTATGAGGTTTATGAAGTAAATGTAAAACCAGCATTACATACCACTTTCACTGAACAAGTTCTTAAAATACGCAGTGCAGTGTATCCCAGAGATCACGGGAAGTTTGAGTGTATAGCAACGAATGGTGTTGATCCATCTGCTAAGTTGGCTTTTGATCTGGATGTGCAAGCTGCACCAGTACTTAACAAAAGGTCAGATACAGTGTTAGCTATTGACGGCGCGGGAGCAGAGGTGTCTTGCTTAGTAGACAAGAGCAACCCCTTGCCGACATTCACATGGCAATACCAAAATTTGGATTGTCCAGATGCTGATTCCTGTCTGCCAGATGAAAATCAGTGGAAATCTGTTCCTGGAAATCTGATGATCACCCCCACAAACACACCAACAAATAAAAGTGTGGTGCAAGTTGAAAAAGACCAGCTAGCATCTTTCTATCGGTGCAAAGCAGTGAACACTGTAGGAAATGATGCTTTTGTCATCAAACTTGTTCGCCTTGCAAAAGCCAAGAAATTGACAGAGTTTGACGCCAACAGTAAAACACAGTTTAATGAAGAGTCTACCTTGCGACTTGTCTGCTTTGACCGGTGTGGTATATTCTGCCCTGTTGCTCACTTCACAAAAGGTGGCGAAAAACTTTCCCATGAAAATGATGCACGTGTGAATGTCACAATATCACAGAGTCCAACATCTGCGGAAAACAGGCTTGTGTTAACCGTCAAGAACTTGACGCTGAATGATTCAGAAAGCTACAGATGTGTATCAAGTGCCAAGCCAGACAAATATGACGAAGTCAATGTCACCATTCACAGTATAGGAAGCGTTAATCCATGTCATGGGAGCTCCTGCTACTTTATTTCGACCGCAGAAGAAGGGCGCTCATGGAATAACAACCGAAACACGTGTCAAGACAAAGGTGGTGACCTAGTTTCCATAGAAACCTTAGCGGAATGGCAGTTTATTAACGGAGAGATTCAAAAGAAATATATTGGAGTACCCAATGAATGGCATATTGGTTTGCATAAGGTGGGAGGAGTTTGGAAGTGGATAAATAATAGCCCATTTAGCCTAGCAAGCAAATGGCAATCGTCACATGGAGAGCCTTCTGGTGACGGAGATGTGGCTGTCATATCAAAGGATTACCCGCCCACTCATCAAGGCGAATTTAATGACCTTGCAAGGACGCGAAAGAGAGCTTTTATTTGCGAGTTATCCACAGCTACCGGAGGAGATACGGGAGGAAGTCCGGGACGGTGACTTTTAAATGGCCACTCTATATAAACCTCATATACAGAGAAGAGAAATAGCACAGTAGCTAGATTCCAATGCTTCGCTGTAGTTACAGGTGAACGTGAGATGATATAACAATAACGTTTTGTTTTGCTAAAAGAAAAAGCTAACTTAAGGTTTACTTCTCTTTAAgccttatata

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00059	Lectin_C	Lectin C-type domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001304	Domain	C-type lectin-like	Interproscan
IPR051275	Family	Cellular adhesion and signaling domain-containing protein	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11640	NEPHRIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0005911	Cellular Component	cell-cell junction	Interproscan
GO:0050839	Molecular Function	cell adhesion molecule binding	Interproscan
GO:0098609	Biological Process	cell-cell adhesion	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06758	CHL1; L1 cell adhesion molecule like protein	-	Cell adhesion molecules	ko04515	deepkoala