Gene detail

Detailed information of KAL9975076.1 in Oculina patagonica

Genomic Location: chr4:11669436...11670812
NR annotation: XP_020622919.1, uncharacterized protein LOC110060475 isoform X1 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
P98160	Basement membrane-specific heparan sulfate proteoglycan core protein OS=Homo sapiens OX=9606 GN=HSPG2 PE=1 SV=4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01391	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008160	Repeat	Collagen triple helix repeat	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR050632	Family	Nematode Cuticular Collagen	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24637	COLLAGEN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13884	MARCO; macrophage receptor with collagenous structure	-	Membrane trafficking	ko04131	deepkoala