Gene detail

Detailed information of KAL9978632.1 in Oculina patagonica

Genomic Location: chr4:47843376...47845736
NR annotation: XP_044177224.1, uncharacterized protein K02A2.6-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

ACROYT_G016169

ATGGAGATTAACCATCAACCTGTGAAACTTCAGGTCGACTGCGGTGCAACTGTTTGCATTCTGCCAAAATGCTACCTTGGAGACCTCCAGATTCGCCCTGAGATTGTCAACCTTCAGATGTGGAACAAATCGTATGTTAAAGCCCTCGGTAAATGCAAAGTACATGTCAGAAACCCGGCTACAATGGAAACGTTCAAGGTCGACTTTGTCATAGTTGACAAGGACCTAACCTCACTACTCAGTGGCAGTGCAGCGCAGGCAATGGGCCTCATTACTGTGAACTTTGATAACTTCAAAGTGGTCAATACAGTTTCCTCAGCTGATCATCTCTTCGTTCAGCAGTTTCCTGATGCCTTCAAGGACACACCAGGCACTCGCCCTGGCAAGAAGGTCCACTTGACCACTGAGGATGGAGCCGTCCCAGTCGTGCGTTGTGCTCGTACACTCCCGGAAGCCAGGAAGGACGTGGTTAAAGCTGAACTTCAGCGACTAAGAGCTGAGTCCATATTTGTGCCAGTTGACGAGCCCACTGACTGGGTTAGTCAGATGTCCGTAGCTGAGAAGAAGTCTGGCATTCGCATCCGCATAGACCCCAGACCACTAAATGAGGTGCTAAAGCATGAAGAACATGATGAACGAGTATGCCTCTTCCTCCAACGCTGTTGTGAAATTGGAATCTCCCTGAACAAAGAGAAGTGCCGCTTTGGTTTGCACGAAATTCCATTCACGGGCCATGTAGTCAGCAACATCGGTCTCAAGCCTGATCCATCAAAGGTGGAAGCTATCACGAAGACGGAACCTCCCACCGATAAAGCAGGTGTGGAAAGGCTGAGAGGAACTGTCAACTATTTGTCTAAGTTCGTACCCAGGCTCGCTGAAGTAATGCGACCTATCAACGACCTAGCTCGTCCCGACACGGAATGGATCTGGGACTCTGTTCAGGACAAAGCCTTTGAGGAAATCAAGCATCTGCTAACACAAGCACCTGTGCTGGCTTACTTTGACCCAACAAAGAAACTTTTTATTCAATGTGATGCTAGTGGACAAGGTTTGGGAGCCACTCTACTACAAGAGGGACGACCACTAGCCTATGCGAGCAGAGCCCTAAGCGACACTGAAACTAGATATGCAACCATCGAGAAGGAGATGCTGGCCAAAGTGTTTTCCCTAGAGAAATGGCACCAGTACACCTTTGGCCGACCTGTCGTGGTGTATTCGGATCACAAGCCCTTAGAGGCTATCACGAAGAAACCGCTTGACAGAGCTCCCAAGCGTCTCCAAGGCGTGCTAGTGCGAGCCCTAGCCTATGACATCAAAGTGCAGTACCTCAATGGCAAAGATGTAGATACTCTTAGCAGAGCATTCCTTCCCAAAGCCAGTGATGATGGGCAAGAAGAGTTTGAAACCGTCAACGCCCTCACATACTTGGTCATGCCTGATAAGAGAATCCGTGAGATTCGCCAGCACACCAGCGGCGATTCGGCCTTACAGCAGCTCAAGCGAACCATCCAAGAAGGCTGGCCAGACAACAAATCATCACTACCGCCACTCATTGTGCCTTACTTCAGCATTCGCGATGAATTGGCAGTCACTGGTGGTTTAGTCTTCCGTGGAGAAAGACTGGTGATTCCCAAGAGCATGAGGTCAGAGATTAAGAATGACATCCACAGTGGTCACCTAGGCGTCGAGTCATGCCTGCGACACGCAAGTGAACATGTATTCTGGCCCGGCATGAAGAAGGAGCTGAAGGAGTGGATCCAAACTTGTGAAACGTGCAGGGAATTCGAGCAGATCCACTGTAAGGAGACACTCGTGAGTCATGAAATTCCCGAGAGAGCATGGAGGAAGATTGCAGCTGATCTGTTCACCTACAAGAACAAAAAATATCTCATCACTGTCTGCTACAAGTCCAATTTCTGGGAGCTAGATCGCCTGTACGACATCAAGTCTTCAATTATCATTAAAAAGCTGAAAGCTCACCTCGCCAGATATGGCATTCCCAAGCAGTTGGCTAGCGATAACGGCCCACAATTTGATTCCAATGAATTCAAAAAGTTCACCAAGAGCTGCTGA

Transcript

rna-ACROYT_G016169.t0

Protein

Uniprot

Uniprot term	Description
Q8I7P9	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P03556	Enzymatic polyprotein OS=Cauliflower mosaic virus (strain D/H) OX=10645 GN=ORF V PE=3 SV=1
P03555	Enzymatic polyprotein OS=Cauliflower mosaic virus (strain CM-1841) OX=10644 GN=ORF V PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan