Gene detail

Detailed information of KAL9979151.1 in Oculina patagonica

Genomic Location: chr4:54394046...54430512
NR annotation: KAJ7380971.1, DNA-directed RNA polymerase III subunit RPC2 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

ACROYT_G016768

ATGACATACTCTGCACCCATCACTGTAGATATTGAGTACACCAGAGGAAGCCAGCGAGTGGTGAGGCATAACTTGCCAATAGGGAGAATGCCGATAATGCTTCGGAGTTCAAACTGTGTATTAACAGGGAAGAGTCCAGCGGAGTTGGCTTCCTTAAATGAGTGTCCTATTGATCCAGGAGGTTACTTCATTGCAAATGGAACAGAAAAGGTTATTTTAATTCAAGAACAACTATCGAAGAATCGCATCATTGTGGAAGCTGACAAAAAAGGAAATATTGGATGTTCTGTAACAAGTTCAACGGCAGAAAGAAAAAGCAGAACAAGTATTGTGACTAAAAAAAACAAGTTTCTTTTGAAACATAATGCTCTGTCTGAGGATGTACCGGTGGTTGTGGTATTCAAGGCCATGGGCATAGAGTGTGAACAGGAAATAGTTCAAATGGTTGGGTGCGAGGAAGAAGTCATCTCCACGTTTGCACCATCACTTGAAGAGTGCCATAGACTCAACATCTACACACAGTTACAGGCCCTGCAGTATGTTGGGTCCAAAGTGCGTCAACGTGCTACATGGGGCAAGAGTAGGACCAAGGTGGAGGAAGCAAGAGAGTTGTTAGCAGGAGTCATGCTTGCTCATGTTCCGGTAATCAAGTATGATTTCAAAGCCAAGTGTGTATTTTTAGCTCTGATGATTCGGAGAGTCATACTTGCTTGCAGTGATGAGGCCCATGTGGATGATCGTGATTACTATGGTAACAAGCGACTGGAACTAGCAGGGCAGCTTCTATCTCTTCTATTTGAGGATCTGTTCAAGAGATTTAATGCTGAGCTCAAAAAGATTGCAGACCAAACGATTCCAAAGCCAAGAGCTGCACAGTTTGACATTGTGAAGCACATGCGTCAGGATCAAATAACACATGGACTGGTTCATGCAATCACCTCGGGAAACTGGATAATTAAGAGGTTTAACATGCATCGTGCTGGTGTCACGCAAGTTCTTTCACGTCTTTCATTTATTTCTGCTCTTGGAATGATGACGAGAATTAGCAGTCAGTTTGAAAAGACACGTAAAGTGAGTGGTCCTCGGTCACTGCAGCCGTCTCAGTGGGGAATGTTGTGTCCGTCAGACACGCCTGAAGGAGAGGCTTGTGGGTTAGTGAAAAACCTTGCACTTATGACACATATCACTACAGACCAGGATGAGGAACCTATTATCCGTCTGGCTTATAACCTTGGAGTAGAGAATCTAAGTATGCTCTCTGGAGAGGAAATAAGCCATCCTTCAGTCTATCTAGTGTTTCTAAATGGAAACATTCTTGGTGTTGTAAAGAGTTACAAGCGGTTAGTTGAGACGTTTCGACTGATGAGAAGAGCTGGCTACATAAGTGAGTTTGTATCCATTTGTCCAAATCACCAACACAGATTTGTCAATATTGCATCTGATGGAGGACGAGTTTGCAGACCCTACATTATCGTTAAAAGTGGTAAACCAAAGGTGGTCGACAGACATATTCAAGAACTTGTGCAAGGGTTTAGGAGTTTTGAGGACTTCTTACACGAAGGCCTGGTTGAGTACTTGGATGTCAATGAAGAAAACGACTGCTCCATTGCCCTTTATGAAAAAGAAATCACAAGGGAGACAACACATCTAGAGATAGAGCCGTTTACTCTGCTTGGTGTATGTGCTGGGCTTATACCATACCCTCACCACAATCAGTCACCCAGGAACACATACCAGTGTGCTATGGGCAAACAGGCCATGGGTTCCATTGGCTACAACCAGCGTAATAGAATAGACACCTTGCTGTACTTTTTATGTTATCCTCAAGTGCCCTTGGTTAAGACGAAGACTATAGATTTGATCCAGTTTGACAAGCTGCCGGCAGGTCAAAATGCAACAGTGGCTGTTATGAGCTACAGTGGATATGATATTGAGGATGCCCTGATTCTCAACAAAGCTTCTGTTGACCGAGGGTTTGGACGCTGTTTAGTTTACAGGAAGCAGACCTGCTTATTAAAAAGATACGCAAATCAGACTTTTGATCGTGTAATGGGTCCCAGTAAAGATGCTAGCACTGGGGAGGTAATCTGGAGACACAGAGCGTTAGATGCTGATGGAATTTGTTCTCCAGGCGAGAGGATAGAAAACAAACAGGTTCTTATAAACAAGTCTATGCCAGTTGTTACTGCTTCTGGACTTCAACCAGTGACACCAGGCCAGCCACCACCACAACCCGAGTATAGAGATGTCCCTGTGTCGTACAAAGGTCCAAAAGATATTTACATTGAACGAGTTCTGGTGACATCAAATGCTGAGGAGGCATTTCTCATCAAGATTCTGCAAAGACAGACGCGGCGACCCGAGATTGGGGACAAATTTAGCAGCAGACACGGACAAAAGGGCGTGTGCGGATTAATTGTGAACCAGGAGGATATGCCCTTTACCGATCTGGGCATCTGTCCTGACATTATTATGAACCCTCATGGCTTCCCGTCTCGGATGACTGTAGGCAAACTGATCGAACTGATGGCCGGCAAGGCTGGTGTTTTAAATGGACATTTTGGATATGGAACAGCATTTGGAGGTGACAAGGTAGAAGATGTGTGCAGTGTGATGGTTGATCATGGCTTCAATTACTCTGGGAAGGAATATGTAACCTCTGGTATCACAGGGGAGCCATTAACAGCTTATATATTCTTTGGACCGGTGTATTATCAGAAGCTCAAACACATGGTGCTGGACAAGATGCATGCTCGTGCTAAGGGACCCCGTGCTGTATTAACAAGACAACCAACAGAAGGACGGTCAAGGGACGGTGGCTTGCGGTTGGGTGAGATGGAACGAGACTGTTTGATTGCATACGGTGCCAGCATGCTCCTCCTTGAAAGACTGATGATTTCTAGTGACGCTTTTGAAGTTGACGTGTGCAGCGAGTGTGGCTTGATGGGATACTCTGGATGGTGCCATTACTGTTCGTCTTCTCACAACATATCCACGTTGAAGATACCCTACGCTTGTAAACTTCTGTTCCAAGAACTCTTGTCCATGAACATTGTACCACGGCTTTCATTGAAGCACTATACGGACGAGTGA

Transcript

rna-ACROYT_G016768.t0

AGTGCCGCTTGCGAGATATGACATACTCTGCACCCATCACTGTAGATATTGAGTACACCAGAGGAAGCCAGcgaGTGGTGAGGCATAACTTGCCAATAGGGAGAATGCCGATAATGCTTCGGAGTTCAAACTGTGTATTAACAGGGAAGAGTCCAGCGGAGTTGGCTTCCTTAAATGAGTGTCCTATTGATCCAGGAGGTTACTTCATTGCAAATGGAACAGAAAAGGTTATTTTAATTCAAGAACAACTATCGAAGAATCGCATCATTGTGGAAGctgacaaaaaaggaaatattggATGTTCTGTAACAAGTTCAACggcagaaagaaaaagcagaaCAAGTATTGTgactaaaaaaaacaagtttcttttGAAACATAATGCTCTGTCTGAGGATGTACCGGTGGTTGTGGTATTCAAGGCCATGGGCATAGAGTGTGAACAGGAAATAGTTCAAATGGTTGGGTGCGAGGAAGAAGTCATCTCCACGTTTGCACCATCACTTGAAGAGTGCCATAGACTCAACATCTACACACAGTTACAGGCCCTGCAGTATGTTGGGTCCAAAGTGCGTCAACGTGCTACATGGGGCAAGAGTAGGACCAAGGTGGAGGAAGCAAGAGAGTTGTTAGCAGGAGTCATGCTTGCTCATGTTCCGGTAATCAAGTATGATTTCAAAGCCAAGTGTGTATTTTTAGCTCTGATGATTCGGAGAGTCATACTTGCTTGCAGTGATGAGGCCCATGTGGATGATCGTGATTACTATGGTAACAAGCGACTGGAACTAGCAGGGCAGCTTCTATCTCTTCTATTTGAGGATCTGTTCAAGAGATTTAATGCTGAGCTCAAAAAGATTGCAGACCAAACGATTCCAAAGCCAAGAGCTGCACAGTTTGACATTGTGAAGCACATGCGTCAGGATCAAATAACACATGGACTGGTTCATGCAATCACCTCGggaAACTGGATAATTAAGAGGTTTAACATGCATCGTGCTGGTGTCACGCAAGTTCTTTCACgtctttcatttatttctgcTCTTGGAATGATGACGAGAATTAGCAGTCAGTTTGAAAAGACACGTAAAGTGAGTGGTCCTCGGTCACTGCAGCCGTCTCAGTGGGGAATGTTGTGTCCGTCAGACACGCCTGAAGGAGAGGCTTGTGGGTTAGTGAAAAACCTTGCACTTATGACACATATCACTACAGACCAGGATGAGGAACCTATTATCCGTCTGGCTTATAACCTTGGAGTAGAGAATCTAAGTATGCTCTCTGGAGAGGAAATAAGCCATCCTTCAGTCTATCTAGTGTTTCTAAATGGAAACATTCTTGGTGTTGTAAAGAGTTACAAGCGGTTAGTTGAGACGTTTCGACTGATGAGAAGAGcTGGCTACATAAGTGagtttgtatccatttgtccaaATCACCAACACAGATTTGTCAATATTGCATCTGATGGAGGACGAGTTTGCAGACCCTACATTATCGTTAAAAGTGGTAAACCAAAGGTGGTCGACAGACATATTCAAGAACTTGTGCAAGGGTTTAGgaGTTTTGAGGACTTCTTACACGAAGGCCTGGTTGAGTACTTGGATGTCAATGAAGAAAACGACTGCTCCATTGCCCTTTATGAAAAAGAAATCACAAGGGAGACAACACATCTAGAGATAGAGCCGTTTACTCTGCTTGGTGTATGTGCTGGGCTTATACCATACCCTCACCACAATCAGTCACCCAGGAACACATACCAGTGTGCTATGGGCAAACAGGCCATGGGTTCCATTGGCTACAACCAGCGTAATAGAATAGACACCTTGCTGTACTTTTTATGTTATCCTCAAGTGCCCTTGGTTAAGACGAAGACTATAGATTTGATCCAGTTTGACAAGCTGCCGGCAGGTCAAAATGCAACAGTGGCTGTTATGAGCTACAGTGGATATGATATTGAGgatGCCCTGATTCTCAACAAAGCTTCTGTTGACCGAGGGTTTGGACGCTGTTTAGTTTACAGGAAGCAGACCTGCTTATTAAAAAGATACGCAAATCAGACTTTTGATCGTGTAATGGGTCCCAGTAAAGATGCTAGCACTGGGGAGGTAATCTGGAGACACAGAGCGTTAGATGCTGATGGAATTTGTTCTCCAGGCGAGAGGATAGAAAACAAACAGGTTCTTATAAACAAGTCTATGCCAGTTGTTACTGCTTCTGGACTTCAACCAGTGACACCAGGCCAGCCACCACCACAACCCGAGTATAGAGATGTCCCTGTGTCGTACAAAGGTCCAAAAGATATTTACATTGAACGAGTTCTGGTGACATCAAATGCTGAGGAGGCATTTCTCATCAAGATTCTGCAAAGACAGACGCGGCGACCCGAGATTGGGGACAAATTTAGCAGCAGACACGGACAAAAGGGcgtGTGCGGATTAATTGTGAACCAGGAGGATATGCCCTTTACCGATCTGGGCATCTGTCCTGACATTATTATGAACCCTCATGGCTTCCCGTCTCGGATGACTGTAGGCAAACTGATCGAACTGATGGCCGGCAAGGCTGGTGTTTTAAATGGACATTTTGGATATGGAACAGCATTTGGAGGTGACAAGGTAGAAGATGTGTGCAGTGTGATGGTTGATCATGGCTTCAATTACTCTGGGAAGGAATATGTAACCTCTGGTATCACAGGGGAGCCATTAACAGCTTATATATTCTTTGGACCGGTGTATTATCAGAAGCTCAAACACATGGTGCTGGACAAGATGCATGCTCGTGCTAAGGGACCCCGTGCTGTATTAACAAGACAACCAACAGAAGGACGGTCAAGGGACGGTGGCTTGCGGTTGGGTGAGATGGAACGAGACTGTTTGATTGCATACGGTGCCAGCATGCTCCTCCTTGAAAGACTGATGATTTCTAGTGACGCTTTTGAAGTTGACGTGTGCAGCGAGTGTGGCTTGATGGGATACTCTGGATGGTGCCATTACTGTTCGTCTTCTCACAACATATCCACGTTGAAGATACCCTACGCTTGTAAACTTCTGTTCCAAGAACTCTTGTCCATGAACATTGTACCACGGCTTTCATTGAAGCACTATACGGACGAGTGACGAGCACATGTCTGGAGATATGCAACTTATTTACTGCCCGGCGTGCGACCACTAGGGCttataaagaaaagaaacacaTCAGTGAGGGAAATGTGAGCGGGTCCCTTGCCACCTCTATTAAAGTCAGAAGCAAGAAACATCTAagtaattgttatttatatggaataaaaaaagtaaataggCCTTTGACGTATTACTTCGCCCCGC

Protein

Uniprot

Uniprot term	Description
Q9NW08	DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens OX=9606 GN=POLR3B PE=1 SV=2
P59470	DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus OX=10090 GN=Polr3b PE=1 SV=2
P25167	DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila melanogaster OX=7227 GN=Polr3B PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04560	RNA_pol_Rpb2_7	RNA polymerase Rpb2, domain 7	Domain	Interproscan
PF04563	RNA_pol_Rpb2_1	RNA polymerase beta subunit	Family	Interproscan
PF04561	RNA_pol_Rpb2_2	RNA polymerase Rpb2, domain 2	Domain	Interproscan
PF04565	RNA_pol_Rpb2_3	RNA polymerase Rpb2, domain 3	Domain	Interproscan
PF04566	RNA_pol_Rpb2_4	RNA polymerase Rpb2, domain 4	Domain	Interproscan
PF00562	RNA_pol_Rpb2_6	RNA polymerase Rpb2, domain 6	Domain	Interproscan
PF04567	RNA_pol_Rpb2_5	RNA polymerase Rpb2, domain 5	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007641	Domain	RNA polymerase Rpb2, domain 7	Interproscan
IPR007644	Domain	RNA polymerase, beta subunit, protrusion	Interproscan
IPR007642	Domain	RNA polymerase Rpb2, domain 2	Interproscan
IPR007645	Domain	RNA polymerase Rpb2, domain 3	Interproscan
IPR007646	Domain	RNA polymerase Rpb2, domain 4	Interproscan
IPR015712	Family	DNA-directed RNA polymerase, subunit 2	Interproscan
IPR007121	Conserved_site	RNA polymerase, beta subunit, conserved site	Interproscan
IPR007120	Domain	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain	Interproscan
IPR014724	Homologous_superfamily	RNA polymerase Rpb2, OB-fold	Interproscan
IPR037033	Homologous_superfamily	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily	Interproscan
IPR037034	Homologous_superfamily	RNA polymerase Rpb2, domain 2 superfamily	Interproscan
IPR007647	Domain	RNA polymerase Rpb2, domain 5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20856	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003899	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0032549	Molecular Function	ribonucleoside binding	Interproscan
GO:0001056	Molecular Function	RNA polymerase III activity	Interproscan
GO:0005666	Cellular Component	RNA polymerase III complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03021	RPC2, POLR3B; DNA-directed RNA polymerase III subunit RPC2	EC:2.7.7.6	Transcription machinery	ko03021	deepkoala