Gene detail

Detailed information of KAL9979562.1 in Oculina patagonica

Genomic Location: chr4:60137911...60146025
NR annotation: CAH3118410.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

ACROYT_G017240

ATGCTACTCCTGCCACTCCTGTTGTTTCTGTTCTCTCAGTTAATGATGATGTACACTATGGAAGACAGTGCTCTTTATCGAAATCCAACAGGCGACTTTTCCGTTGGCGACTTTCAGCGAAACACCTTCCACTACTTATGGGTAAAGAAAATAACATCGTCCATGGTGGCAGATCAGTTAGATTGCACTTTCCTTTGTGTTGGTGAACCAAAGTGTTATTCGTTTAACATGGCGGCGTATCCTGACTCGAAAGGTCTTTATCTGTGTGAGTTGTTGGCCACTGACAAGTACAGAGCAACTAAAAAGTTTCACACCAATGCTACCTTCCATCATTACAGTCCTTTGTCTCCATGTGAAAGCGATCCTTGCAAGAACGGTGCCGACTGTGTTCCTGAATATGAACTGAACTCCTATCGCTGTCACTGCAAGCTGGGATTCTGTGGAACTCATTGCGAAGTGAAAGTTATAGGAGAAAATAAAAGCTGTAGTGAGATTAAGTTGTGCAATCCCAAAGCTCCAAGTGGTTCTTACGTCATCGACCCTGATGGAGACGGAGGCGTGACACCTTTCACTGTTGACTGTGACATGACTGACAAGAGCAAAGTCGGCGTGACAGTCATCAGTCACGACAGTGAAGACAGAACGCTGGTCAGTGGATGTGGCCCTCGTGGCTGTTACAGTCGTGACATTCAGTACATTGGGGCAAATCGTTACCAGCTGGGAAACCTAACGGCCATATCTACACACTGTGAGCAGTTTATCAAGTATGAATGTTGTCACTCAGTGCTCTTATTCAACGGTGGAATGTATGGCTGGTGGGTGTCACGTGATGGAGACAAGATGACGTATTGGGGAGGAAGCAATTCCAGGTTCCCTTACAAATGCGCATGCGGAGTAACTGGAACCTGTGCAGACAACAGTCGCGGTTGTAACTGCGACAAAAATGATTATGTGTGGCGCGAGGACAGCGGTTTGTTGACAGACAAATCCCACCTTCCCGTGATGCAGCTCAGGATCATTTACAACTGTACGAGGCATCCCACACTTGCAGTGTTGCGAGCAAATAAACAGAAGTTAATGATGATGTACACTATGGAAGACAGTGCTCTTTATCGAAATCCAACAGGCGACTTTTCTGTTGGCGACTTTAAGCGAAATCCCTTCCACTACTTACGAGCAAAGAAAATAACATCGTCCATGGTGGCAGATCAGTTAGATTGCACTTTCCTTTGTGTTGGTGAACCAAAGTGTTTTTCGTTTAACATGGCGGCGTATCCTGACTCGAAAGGTCTTTATCTGTGTGAGTTGTTGGCCACTGACAAGTACAGAGCAACTAAAAAGTTTCACGCCAATGCTACCTTCCATCATTTTAGCCCTTGGTCTCCATGTGAAAGCGATCCTTGCAAGAACGGTGCCGGCTGTGTTCCTGAATATGAACTGAACTCCTATCGCTGTCACTGCAAACTGGGATTCTTTGGAACTCATTGCAAATCGATAGTCATAGGAGAAAGTAAAAGTTGTAGTGACATCAAGTCACACAATCCCAAAGCTCCAAGTGGTTCTTACGTCATTGACCCTGATGGTAAAGGAGGCGTGACACCTTTCACTGTTTACTGTGACATGACTGACAAGAACAAAGTTGGCGTGACAGTCATCAGTCACGACAGTGAGGAAAGAACACTGGTGCTAGGATATGAAGATCCAGGCAGCTACAAGCGTGACATTCATTACATTGGGGCAAATCTTCTGCAGCTGGGAAACCTGACGGCCATATCTGTACACTGTGAGCAGTTTATCAAGTACGAATGTTACGATTCACAACACATTCTTGAAAATGTTTTGTACGGCTGGTGGGTGTCACGTGATGGATACAAAATGACGTATTGGGGAGGAAGTAACTACAGCTTTCCTTACAAGTGCGCATGCGGAGTAACTGGCACGTGTGCAAACAACGTTGCCAGCTGTAACTGTCAAAATAATGATGCTGTGTTTCGTGAGGACAGCGGTTTGCTGACAGAAAAATCCCACCTTCCCGTGATGCAGCTGCGGTTTGGAGACACTGGGGGACCGGACGAGTACGGTCACCACACTCTGGGAAAACTGAAGTGTTATGGGATTGCAAGCAAATGA

Transcript

rna-ACROYT_G017240.t0

GCTTTAACAGCAAAAGTAAAACGTGAAACAAAACTCCTACTTAGGAAGACTAATCAAACAACCAGCcagtcaattaatcaatcaatcaatcaatcaatggcTGTCCTTTTCTTCTTAAAAGAGAACTTTCGCTCTCTCTTTCTTCAAACGACACATTGTTGTCGCTAGTGGCCTCGCCATGCTACTCCTGCCACTCCTGTTGTTTCTGTTCTCTCAGTTAATGATGATGTACACTATGGAAGACAGTGCTCTTTATCGAAATCCAACAGGCGACTTTTCCGTTGGCGACTTTCAGCGAAACACCTTCCACTACTTATgggtaaagaaaataacatcgtCCATGGTGGCAGATCAGTTAGATTGCACTTTCCTTTGTGTTGGTGAACCAAAGTGTTATTCGTTTAACATGGCGGCGTATCCTGACTCGAAAGGTCTTTATCTGTGTGAGTTGTTGGCCACTGACAAGTACAGAGCAACTAAAAAGTTTCACACCAATGCTACCTTCCATCATTACAGTCCTTTGTCTCCATGTGAAAGCGATCCTTGCAAGAACGGTGCCGACTGTGTTCCTGAATATGAACTGAACTCCTATCGCTGTCACTGCAAGCTGGGATTCTGTGGAACTCATTGCGAAGTGAAAGTTATAGGAGaaaataaaagcTGTAGTGAGATTAAGTTGTGCAATCCCAAAGCTCCAAGTGGTTCTTACGTCATCGACCCTGATGGAGACGGAGGCGTGACACCTTTCACTGTTGACTGTGACATGACTGACAAGAGCAAAGTCGGCGTGACAGTCATCAGTCACGACAGTGAAGACAGAACGCTGGTCAGTGGATGTGGCCCTCGTGGCTGTTACAGTCGTGACATTCAGTACATTGGGGCAAATCGTTACCAGCTGGGAAACCTAACGGCCATATCTACACACTGTGAGCAGTTTATCAAGTATGAATGTTGTCACTCAGTGCTCTTATTCAACGGTGGAATGTATggctggtgggtgtcacgtgatggagACAAGATGACGTATTGGGGAGGAAGCAATTCCAGGTTCCCTTACAAATGCGCATGCGGAGTAACTGGAACCTGTGCAGACAACAGTCGCGGTTGTAACTGCGACAAAAATGATTATGTGTGGCGCGAGGACAGCGGTTTGTTGACAGACAAATCCCACCTTCCCGTGATGCAGCTCAGGATCATTTACAACTGTACGAGGCATCCCACACTTGCAGTGTTGCGAGCAAATAAACAGAAGTTAATGATGATGTACACTATGGAAGACAGTGCTCTTTATCGAAATCCAACAGGCGACTTTTCTGTTGGCGACTTTAAGCGAAATCCCTTCCACTACTTACGAGCAAAGAAAATAACATCGTCCATGGTGGCAGATCAGTTAGATTGCACTTTCCTTTGTGTTGGTGAACCAAAGTGTTTTTCGTTTAACATGGCGGCGTATCCTGACTCGAAAGGTCTTTATCTGTGTGAGTTGTTGGCCACTGACAAGTACAGAGCAACTAAAAAGTTTCACGCCAATGCTACCTTCCATCATTTTAGCCCTTGGTCTCCATGTGAAAGCGATCCTTGCAAGAACGGTGCCGGCTGTGTTCCTGAATATGAACTGAACTCCTATCGCTGTCACTGCAAACTGGGATTCTTTGGAACTCATTGCAAATCGATAGTCATAGGagAAAGTAAAAGTTGTAGTGACATCAAGTCACACAATCCCAAAGCTCCAAGTGGTTCTTACGTCATTGACCCTGATGGTAAAGGAGGCGTGACACCTTTCACTGTTTACTGTGACATGACTGACAAGAACAAAGTTGGCGTGACAGTCATCAGTCACGACAGTGAGGAAAGAACACTGGTGCTAGGATATGAAGATCCAGGCAGCTACAAGCGTGACATTCATTACATTGGGGCAAATCTTCTGCAGCTGGGAAACCTGACGGCCATATCTGTACACTGTGAGCAGTTTATCAAGTACGAATGTTACGATTCACAACACAttcttgaaaatgttttgtacggctggtgggtgtcacgtgatggaTACAAAATGACGTATTGGGGAGGAAGTAACTACAGCTTTCCTTACAAGTGCGCATGCGGAGTAACTGGCACGTGTGCAAACAACGTTGCCAGCTGTAACTGTCAAAATAATGATGCTGTGTTTCGTGAGGACAGCGGTTTGCTGACAGAAAAATCCCACCTTCCCGTGATGCAGCTGCGGTTTGGAGACACTGGGGGACCGGACGAGTACGGTCACCACACTCTGGGAAAACTGAAGTGTTATGGGATTGCAAGCAAATGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF01410	COLFI	Fibrillar collagen C-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036056	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR000885	Domain	Fibrillar collagen, C-terminal	Interproscan
IPR050372	Family	Neurexin-related cell adhesion and synaptic protein	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15036	PIKACHURIN-LIKE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005201	Molecular Function	extracellular matrix structural constituent	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan