Detailed information of KAL9980587.1 in Oculina patagonica

Genomic Location: chr3:8784586...8792869
NR annotation: XP_020631833.1, protein HIRA-like [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P79987Protein HIRA OS=Gallus gallus OX=9031 GN=HIRA PE=1 SV=2
Q8QFR2Protein HIRA OS=Xenopus laevis OX=8355 GN=hira PE=1 SV=2
Q61666Protein HIRA OS=Mus musculus OX=10090 GN=Hira PE=1 SV=3
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR031120FamilyWD repeat HIR1-likeInterproscan
IPR020472RepeatG-protein beta WD-40 repeatInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13831MEMBER OF THE HIR1 FAMILY OF WD-REPEAT PROTEINSInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000417Cellular ComponentHIR complexInterproscan
GO:0000790Cellular ComponentchromatinInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006325Biological Processchromatin organizationInterproscan
GO:0006336Biological Processchromatin organizationInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0006351Biological ProcessDNA-templated transcriptionInterproscan
GO:0031491Molecular Functionnucleosome bindingInterproscan

TOP