Gene detail

Detailed information of KAL9980727.1 in Oculina patagonica

Genomic Location: chr3:10481025...10484539
NR annotation: KAJ7374013.1, glycerophosphoinositol permease [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-ACROYT_G009358.t0

CAGCGAGCGCGAAGTGCGAGGGCGAGCGTGAAGCGCGGAAAACTTGCAATGCGATCAAGTTACGATTTcataaagccttcatcaattgctattacagtaatggtgtgaaacaaatgttcaatcattcatcaacaagttgtgatcattttcttgacaatagtagttccccggtaaacagttgtagtactgtcccatcaaagtgcaatggctggaaaataccgaaaagcacacgaccttcaggtgaaaccgcaccttacagtattaccaatacactgtactttgctaagtcttaaaactttacattttctagtcgtctacttcaatcgtttatttgtattgtgtgaaatacatttataaattgaaaccatcatgtcattaagtaataatgcaatctcgacaacgttctagataattattatatattatgcacactaatacagctcatgcaagccctgtgacttacacaaacacagtcggactgagtgctacttaagtaactgcttcgtggtttctgctgtactgaaccctgcctttcaaggcaaagcgcccgattttaagcttctcaagcttctcaatgttcttgtttataataagctgtttattagcatttgtattttccaaatatcacattagatggttttaggatgtaacaaacagtgataagagaaagacaaaTTTTTTCTTGAGATTGTACAAAAGAATTAAAGGTTggactgatttgccctctcaaaactgtatttaGCCACCTTAATTACCATGCAATGAGTGGATGCTTACTGTGAGCCCACCAACTAAAGCTATAGGGGAAAAGAAACCTAAACAAAATTCAGGGCTTCTTctcaattgcttaaattggtggGCATGAATTCTTAATTTCTGATTGAATCAATTTGTGCAGGCAGAAAAACTCCCAAACCTAATTTGGCACTTTAAGGaggattgaaaataaaatagaaattggACCCGAAGCTGGGTGTTTTGGTTAATCTGGGATTTTGTTCAAATACGTAGCATCCCACTCTTTGTCTTTACTCCACTCTTACTTagtctattgtttatttgtccTGATTAAAGTCTCTGTTATAAATGAATAATTGGTTCACAAGTTAGAAGATGAAAAAAACTTAAGGAGTCAGTTGGGAATAACGTCTTTTCTCCTGCGGTGAGTAGAACATACATCtataattatctgtaaaaataaTAGCCAAAGGGAAAGAGACTTGGTAGATACATAGTAACTTATACGGGGAATTCTTAAAATAAGTCTTAAAGTCTCTTTACTCTGTTGTGTGTGTGTGGGTGAAATGACACTCCTTTAGAGTTTCTTTACAAGtcacataattttcattttgttaactCAGGCATTCCAAGATGCAAATGATGAAGATGATCTTGTGGATATCGGAAAAAAAGAACCATATGCTGCCCCAGGCTCTCTCCTAAATCGCCCTACTCAGCCCCCTACTCTGGGGCAGTCCACCATGCCGGGGATGCGAGTAGAACTAAAACAGTCAATCCGTATGATAATGTGACTGACTCACCAGATGAACCGACGAAGAACATAGATATCTAAATGTCAAAGAGAGGAGGGAACACGAAAGAATGAGTTCTTTGGACAGTCCTTTTGAGGAACATTTGGATCGGGAGGCTGAGAAGCTGATCCACGCAGTAGATGATTTAGTTCATGAAGCCACAAAAGATATTAGACAGCAGCCATCACAGGAAGATGTGGTACGGTGCACAGAACAGAAAATTCAAGAACTGCTGCTGGCAGCACAGGCTGGAAGGCACAGCTGtttcattccctgttcaAGTAATATTTTCACTGCTGTAAATGATATGGCTAGCTTATTTTCTGAGGAACCAGACGTAGACAGCATGCGTGTCTCACTTCAATTGATGAAGAGTAGTGCCGCCAGATTGAAAGTAGAGTGTAAGAGTGCTGTGTTGCCTGGGAACGCTGTAGATATGGCGTTCCTCACTCAACAGGTCATACAATGTGCTTATGACCTCGCAAGAGCTGCTAAACAACTGGTGACAACGTTTTCAGTAGATTAA

Protein

Uniprot

Uniprot term	Description
Q14161	ARF GTPase-activating protein GIT2 OS=Homo sapiens OX=9606 GN=GIT2 PE=1 SV=2
Q9JLQ2	ARF GTPase-activating protein GIT2 OS=Mus musculus OX=10090 GN=Git2 PE=1 SV=2
Q66H91	ARF GTPase-activating protein GIT2 OS=Rattus norvegicus OX=10116 GN=Git2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12205	GIT1_C	G protein-coupled receptor kinase-interacting protein 1 C term	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022018	Domain	ARF GTPase-activating protein GIT1, C-terminal	Interproscan
IPR047161	Family	ARF GTPase-activating protein Git-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46097	G PROTEIN-COUPLED RECEPTOR KINASE INTERACTING ARFGAP	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0007420	Biological Process	brain development	Interproscan
GO:0008277	Biological Process	regulation of G protein-coupled receptor signaling pathway	Interproscan
GO:0031267	Molecular Function	small GTPase binding	Interproscan
GO:0032012	Biological Process	regulation of ARF protein signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K22559	COMMD3, BUP; COMM domain containing 3	-	Ubiquitin system	ko04121	deepkoala