Detailed information of KAL9982422.1 in Oculina patagonica

Genomic Location: chr2:2035892...2043573
NR annotation: XP_020612728.1, U5 small nuclear ribonucleoprotein 200 kDa helicase-like, partial [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q6P4T2U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Mus musculus OX=10090 GN=Snrnp200 PE=1 SV=1
F1LNJ2U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Rattus norvegicus OX=10116 GN=Snrnp200 PE=1 SV=1
O75643U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens OX=9606 GN=SNRNP200 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02889Sec63Sec63 Brl domainFamilyInterproscan
PF03372Exo_endo_phosEndonuclease/Exonuclease/phosphatase familyDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR014756Homologous_superfamilyImmunoglobulin E-setInterproscan
IPR004179DomainSec63 domainInterproscan
IPR005135DomainEndonuclease/exonuclease/phosphataseInterproscan
IPR035892Homologous_superfamilyC2 domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24075SEC63 DOMAIN-CONTAININGInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000388Biological Processspliceosome conformational change to release U4 (or U4atac) and U1 (or U11)Interproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003724Molecular FunctionRNA helicase activityInterproscan
GO:0005681Cellular Componentspliceosomal complexInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan

TOP