Detailed information of KAL9982530.1 in Oculina patagonica

Genomic Location: chr2:3387581...3394655
NR annotation: PFX31656.1, Retrovirus-related Pol polyprotein [Stylophora pistillata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P03360Gag-Pol polyprotein (Fragment) OS=Avian reticuloendotheliosis virus OX=11636 GN=pol PE=1 SV=2
P10273Gag-Pol polyprotein OS=Feline leukemia virus OX=11768 GN=pol PE=3 SV=2
P10272Gag-Pol polyprotein OS=Baboon endogenous virus (strain M7) OX=11764 GN=pol PE=3 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00665rveIntegrase core domainDomainInterproscan
PF01410COLFIFibrillar collagen C-terminal domainFamilyInterproscan
PF17921Integrase_H2C2Integrase zinc binding domainDomainInterproscan
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR000885DomainFibrillar collagen, C-terminalInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR002181DomainFibrinogen, alpha/beta/gamma chain, C-terminal globular domainInterproscan
IPR052160FamilyGypsy Retrotransposon Integrase-likeInterproscan
IPR041588DomainIntegrase zinc-binding domainInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR036056Homologous_superfamilyFibrinogen-like, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47266ENDONUCLEASE-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0005201Molecular Functionextracellular matrix structural constituentInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan

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