Gene detail

Detailed information of KAL9983048.1 in Oculina patagonica

Genomic Location: chr2:10471186...10501325
NR annotation: CAH3037748.1, unnamed protein product, partial [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ACROYT_G005172

ATGCGTACTGGATATTCCACAGGCTCTTTTGGAGGAAAATGCTCGCCAATTAACTGTACAGCTATTGTTCCCGGATGCACTGAGGACTGTGGGTGTTCTAATTATGGATATGGCCCCACAGTCCGCTGCAATAATCGAGAGATAGAAAGCGTTCCAAGAGTGCTGATAGAGTCAATGCCCAACGACACTCGCACACTATACCTTTATACGAACAGAATTAAAACACTGCCGAAATCCATATTCCGGGGACTACTTCATCTGAAGACATTATCATTGGATTATAATCAACTGGAAGAAATCAAGAATGACACGTTCAAAGGAATGGAAAATCTTTATTCACTATCATTAAATCATAACCAACTGGAAGGAATTGCAGTTGATTCTTTCAAAGGAATGAAAAGGCTTGAATATCTTAATTTGCAGTATAATAAAATACGAAAAATAGCTGGCGGGGCGTTTAGAGATCTTTTTCACCTTACGGTTTTATCGTTAAATCATAATCAACTGGAAGAAATAACCAACGATTCTTTCACAGGAATGGAAAATCTTTTAAATATGGATCTCGGTTTTAATAAAATAAGGAAAATAGCAAGCGGAGCCTTTAAAGATCTTATTCGCCTGAAATCACTAAATGCAAACTTTATGCTAAACGAGCAGTTAGTTACCATTAAAAGGGGATCACTACTTGGACTGAGGAATTTGACTAACCTGGCATTTCACAACAATGGACTGAAAACTATTGATGAGCACGCTTTTGAAGATCTTATCAGTGTTACATACCTCGATATGGCAGAGAACAAACTGCGAGAAATCAAGCCTGGAATGTTTCTTGGATTGAAAAGCTTAGAAACGTTGTGGCTTGAAGAAAACAAAATAACGATTATCCACAAAGGAAGCTTTCAGAACCTGAGGAGTCTACTGACACTATTTATCGAAAAAAATAACATCACCGTTCTCCTACATGGGTCATTTGATGGTTTAGTGAGTCTGCTTATCCTGGAGATGAGATCAAGTAGCATCAAGTACATAGAGGACAAAGTATTTAAAGACCTTTCAAAACTTCAATATTTGGGATTATTAGACAATAAACTACTTGCGATCAATGCCAACACCTTGAAAGGGCTCGCCAATCTCGTTTATATTGATGCAGGAGAAAATCCACTCCGTTCAATAGATAGTCATGCATTTCAGGACACGCGATCTTTGCAAAGTGTTAATTTTATAGGAATCTCACTGGATATCATACCAGCCATATATCCGTTGACACCAATCAACGTAACTTTACAGCTGTTTCCATCCAGTGATCCATTAAAAGTCACATTTCAAAATAACAATGAGACGCTCGATTATTTTATGCTGACAAAGATTGGACTAATGTGCATGGGCCATGATGTGTCCATAGAGTGTATTTTATGTCCAACAGGGACCTACGCTTCCTGGTTCATGAGATACTGTTTGCTTTGTCCTGCAGGGGGCTTTTACCAAGACGAGATGGGTTATTCAGGAAGTGCCACCAGATTTGGCAATCTGCTGTGTAAAGAATGTCCACCAGGAAGATATGTTCATCCAGATAAGGCTCCTGGGAAGGCCATTACTGAATGCACTTCCTGTCCACAAGGGACTCAATACAACAAATTTGCCATGTTCCGAGCCTGCCCTTGTATTGACCAGTTTTACCGTTTTGACCGTTTTGGACCATGCTTCCAATGCTATTCAGTTGGACTTATATGTAGAAATGAGAGTGTTGACCTCAATCCCGGATTTTTCTGGAAGTGGGAATCCCAAGAAAGCAGACAACTTTACGAGAAATTCAAAGATGGTCTAAGAGTACAACATAACCAATATGACAAGGGGTTAACGAAATTCAATCGTTCTTTACCAAAAGTGTATGCATGTCCGATAGCATCTGCATGCCTGGGAGGCATGGAATCCACATGTTCCCATGGTTACGAGGGACCAGTGTGCGCTGTTTGTAGTAAGGGGTACTACAAGATGATATCCACGTGCCAAAAGTGTCCGTCTAAGAAATGGCTTGTCGGACAAATATCCTTAGCAGTTGTATTCCTGTTGCTGGTTGCTCTTCCTCTGATATATGGCATGAAGATGAGAGGTACATCGGGGAGGTCTTTAACGGACATTGTTCTTGCAAGATTAAAGATCTTCATCAGTTTTTACCAAGTAACCTCAGCAACATTTGATGCTTTTTCATATGTGGAATGGCCCAAGACCTTGCTTCAACTTGGCACTTACGCAAAGTTCCTTCAACTGAATCTGTTGCAAATTGCTCCTGTCAACTGCTTCTCAAACACAATAAAAGTGACAATCTACACGTCGTTCCTCGTATCTGTAGTCATGATCCTCGCATTTGTTGTTATGGCGGTCCTGTACTATCACTTTCGACGACTTTATGTAACCAAGATGAAATACAACAATGGCCAAGAAGCAAAAAAGTTAGTCGCTGAAGCAAAGGAAGTCTGCTTTCGATACGTGTTCCTTCTAATGTTTACCGTGTTTCCCACAACGTCTACATTGGTTTTTCAAATGCTACCATCTTCATGTCAGAAGATTTGTGTTGACACCCAAGAAAATTCATGCCAGTCCTACTTAAGATCTGACTATTCAGTGGAATGTTTCACCAACACATACAACAAGTATGCTGTCCTTGCCTTTATCATGCTGTCATACGTGGTGGGTTTCCCCCTTGTAACTCTGTTCCTGTTGTGGAAATATCATCCAAAGGAAACCGAAAACGACCTTGACGATCGCGAAGGAAACGAGATTCAAGCCGGATTGAGCTTTCTGTACGAAAACTACTCCAGCAACTGCTGGTTTTGGGAGGTTTTGGAGCTCGTACGAAAAATCATTCTGACGTCAGTGCTTGTTCTTATTGGGGGCGAAAGTCGTACAAACCTGGGAGTGGCGGCCATCATGTCAGGATTGTACACCGTACTGTTTGCATCTTATCAGCCAATCAAAGATCGATTTGAACACTGGCTCCAACTCGCTTCCCTCCTGGCAACCTGTGCAACTATGAACGTTGGAATACTGCTAAAGATACCAGAGGAGAACATTTCTTCCGGGATAAAGACCGAAGTGGAAGGAGTTGGAATAACAGCTATCCTGGTCTCCGTTAACGTCTTGGTGATGGGTATGATTGCAGTTCGTTATCTGGCAGCGTCCTTTACCGTTGTACAAGCCTTGAGACGGCATCCTCATTGCAACGCAGAGTGTTGTCTATCTGTGATAATGATGATGAATGATGCAGTGGAAGACGTGGCCGTGTATGAACACGAAAGTGACAAAGATGAAGATGAGCAGAGTGGAAACGAAGAACCCCATGACCTAAACAAGCAAGAATAA

Transcript

rna-ACROYT_G005172.t0

atgcgtactGGATATTCCACAGgcTCTTTTGGAGGAAAATGCTCGCCAATTAACTGTACAGctATTGTTCCCGGATGCACTGAGGACTGTGGGTGTTCTAATTATGGATATGGCCCCACAGTCCGCTGCAATAATCGAGAGATAGAAAGCGTTCCAAGAGTGCTGATAGAGTCAATGCCCAACGACACTCGCACACTATACCTTTATACGAACAGAATTAAAACACTGCCGAAATCCATATTCCGGGGACTACTTCATCTGAAGACATTATCATTGGATTATAATCAACTGGAAGAAATCAAGAATGACACGTTCAAAGGAATGGAAAATCTTTATTCACTATCATTAAATCATAACCAACTGGAAGGAATTGCAGTTGATTCTTTCAAAGGAATGAAAAGGCTTGAATATCTTAATTTGCAGTATaataaaatacgaaaaataGCTGGCGGGGCGTTTAGAGATCTTTTTCACCTTACGGTTTTATCGTTAAATCATAATCAACTGGAAGAAATAACCAACGATTCTTTCACAGGAATGGAAAATCTTTTAAATATGGATCTCGGTTTtaataaaataaggaaaatagcAAGCGGAGCCTTTAAAGATCTTATTCGCCTGAAATCACTAAATGCAAACTTTATGCTAAACGAGCAGTTAGTTACCATTAAAAGGGGATCACTACTTGGACTGAGGAATTTGACTAACCTGGCATTTCACAACAATGGACTGAAAACTATTGATGAGCACGCTTTTGAAGATCTTATCAGTGTTACATACCTCGATATGGCAGAGAACAAACTGCGAGAAATCAAGCCTGGAATGTTTCTTGGATTGAAAAGCTTAGAAACGTTGTGgcttgaagaaaacaaaataacgaTTATCCACAAAGGAAGCTTTCAGAACCTGAGGAGTCTACTGACACTatttatcgaaaaaaataacatcaccGTTCTCCTACATGGGTCATTTGATGGTTTAGTGAGTCTGCTTATCCTGGAGATGAGATCAAGTAGCATCAAGTACATAGAGGACAAAGTATTTAAAGACCTTTCAAAACTTCAATATTTGGGATTATTAGACAATAAACTACTTGCGATCAATGCCAACACCTTGAAAGGGCTCGCCAATCTCGTTTATATTGATGCAGGAGAAAATCCACTCCGTTCAATAGATAGTCATGCATTTCAGGACACGCGATCTTTGCAAAGTGTTAATTTTATAGGAATCTCACTGGATATCATACCAGCCATATATCCGTTGACACCAATCAACGTAACTTTACAGCTGTTTCCATCCAGTGATCCATTAAAAGTCACATTTCAAAATAACAATGAGACGCTCGATTATTTTATGCTGACAAAGATTGGACTAATGTGCATGGGCCATGATGTGTCCATAGAGTGTATTTTATGTCCAACAGGGACCTACGCTTCCTGGTTCATGAGATACTGTTTGCTTTGTCCTGCAGGGGGCTTTTACCAAGACGAGATGGGTTATTCAGGAAGTGCCACCAGATTTGGCAATCTGCTGTGTAAAGAATGTCCACCAGGAAGATATGTTCATCCAGATAAGGCTCCTGGGAAGGCCATTACTGAATGCACTTCCTGTCCACAAGGGACTCAATACAACAAATTTGCCATGTTCCGAGCCTGCCCTTGTATTGACCAGTTTTACCGTTTTGACCGTTTTGGACCATGCTTCCAATGCTATTCAGTTGGACTTATATGTAGAAATGAGAGTGTTGACCTCAATCCCGGATTTTTCTGGAAGTGGGAATCCCAAGAAAGCAGACAACTTTACGAGAAATTCAAAGATGGTCTAAGAGTACAACATAACCAATATGACAAGGGGTTAACGAAATTCAATCGTTCTTTACCAAAAGTGTATGCATGTCCGATAGCATCTGCATGCCTGGGAGGCATGGAATCCACATGTTCCCATGGTTACGAGGGACCAGTGTGCGCTGTTTGTAGTAAGGGGTACTACAAGATGATATCCACGTGCCAAAAGTGTCCGTCTAAGAAATGGCTTGTCGGACAAATATCCTTAGCAGTTGTATTCCTGTTGCTGGTTGCTCTTCCTCTGATATATGGCATGAAGATGAGAGGTACATCGGGGAGGTCTTTAACGGACATTGTTCTTGCAAGATTAAAGATCTTCATCAGTTTTTACCAAGTAACCTCAGCAACATTTGATGCTTTTTCATATGTGGAATGGCCCAAGACCTTGCTTCAACTTGGCACTTACGCAAAGTTCCTTCAACTGAATCTGTTGCAAATTGCTCCTGTCAACTGCTTCTCAAACACAATAAAAGTGACAATCTACACGTCGTTCCTCGTATCTGTAGTCATGATCCTCGCATTTGTTGTTATGGCGGTCCTGTACTATCACTTTCGACGACTTTATGTAACCAAGATGAAATACAACAATGGCCAAgaagcaaaaaagttagtcgcTGAAGCAAAGGAAGTCTGCTTTCGATACGTGTTCCTTCTAATGTTTACCGTGTTTCCCACAACGTCTACATTGGTTTTTCAAATGCTACCATCTTCATGTCAGAAGATTTGTGTTGACACCCAAGAAAATTCATGCCAGTCCTACTTAAGATCTGACTATTCAGTGGAATGTTTCACCAACACATACAACAAGTATGCTGTCCTTGCCTTTATCATGCTGTCATACGTGGTGGGTTTCCCCCTTGTAACTCTGTTCCTGTTGTGGAAATATCATCCAAAGGAAACCGAAAACGACCTTGACGATCGCGAAGGAAACGAGATTCAAGCCGGATTGAGCTTTCTGTACGAAAACTACTCCAGCAACTGCTGGTTTTGGGAGGTTTTGGAGCTCGTACGAAAAATCATTCTGACGTCAGTGCTTGTTCTTATTGGGGGCGAAAGTCGTACAAACCTGGGAGTGGCGGCCATCATGTCAGGATTGTACACCGTACTGTTTGCAtcttatcagccaatcaaagatCGATTTGAACACTGGCTCCAACTCGCTTCCCTCCTGGCAACCTGTGCAACTATGAACGTTGGAATACTGCTAAAGATACCAGAGGAGAACATTTCTTCCGGGATAAAGACCGAAGTGGAAGGAGTTGGAATAACAGCTATCCTGGTCTCCGTTAACGTCTTGGTGATGGGTATGATTGCAGTTCGTTATCTGGCAGCGTCCTTTACCGTTGTACAAGCCTTGAGACGGCATCCTCATTGCAACGCAGAGTGTTGTCTATctgtgataatgatgatgaatgATGCAGTGGAAGACGTGGCCGTGTATGAACACGAAAGTGACAAAGATGAAGATGAGCAGAGTGGAAACGAAGAACCCCATGACCTAAACAAGCAAGAATAAAATTATGTGGCATAAACAAAACGTTTTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR050328	Family	Multifunctional Developmental and Immune Receptor	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24373	SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan