Gene detail

Detailed information of KAL9983599.1 in Oculina patagonica

Genomic Location: chr2:17784217...17797661
NR annotation: XP_020623732.1, proline-rich protein 5-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-ACROYT_G005795.t0

cCTTACTAAGAACTACCAGCTTTGTTGGctactttttttgaaaatacaGTTAGTTCATTTCAATGGCTCGGTCGCCCGTGAGTTTAGGTGAAATTTTGAGAAAGGATCCTTCGGTAACGATGGTAGGGGTGCAGCGACCCAGAAGTCCGAAATTGGCGGACAAAAGGTTCAGTTTTGCGGGCGGCAAGACCGAAGATTGGAACACAGTGTCGAATGCTGTCACTGCTCTCTTCCAACGAAAGAAGCTAGCAAAATTAGAATTAAGCAGTCTGACAGAAAAggtaaaatcagtaaaaaaCGAAATCGGAGGCACGACTATATGCGAATGGTTTAAGGAATCACTTGTAaagggaatgattatcctacgCGAGGATGTAAAGGACAAGAATGGCGAAGTTCTTTTGGATAAGCTGGGCGATAGTTGGACCTATTTCTTCTGCACGATATTGCCGTTGCTTCAAGCAATTTTCTTTGATATACAGTCCCGCGAAGCACAGTCTACAAGATCCATCGCTCTCTTAAACTTTCGAGATGTCGTCGTGTTGAAAACCAAACTGGAAGAAGCATTCGCTATGGACTTGACTGTACCTCCTAAAGTTGTTCAGATGTTGTTGATTTTGCAGagtGTTCATGATGACCAAAATAGCAGAAATTACAGAAAACTGGAACATCTTATCTCCTTTGTCGTGTCACCTTACTTAAGTTCAACAGGCTTGAGGACAAAACCTGTCAAACAAACACTGGATTCCAAAGCAAGTAATAGCGAAGAACCAAATAGTGTGTCAGAAAAACCCACAATGCCGAGAGCATTCCTGCTAAAAAGGGATTTTGATGACGGCAATTATTTCGACGAAGGAAAGCTACCTTTCGTACAGCAAGAGGACGCGAAAGCCGCAGATGAGGATTATCAGGACGTCAGGCGAAGCAAGAGGCCggcaaaaataaagaaagaagaagaagcaGCCGAGTTTTTCAACGcgtttcaaaagaaaaagaaattatcgTACCCTGCCGATGTCAAAATCGATGGCCGAGTGAATGATATCGGAAAGATTTTGAGGTTTGCAAATGATTTCATTAATAATGGAAAGAAAATGTCGGGCCAAAATGCTCAAAAAAACAGTCTTCGTGAGATTTCTCTTATCGCCGAGCGAAGAATATTTCAGGAGAACGAAGCGCTAGAAGAGAAATCTGGAGTGCTTGGCTTCAACGAGAACTCCGACTCACACTCGGTCGAATCTACCAAACGGGTACCATCTGctacaaataaaaaaagttctCAGCTGAATAAAGCAAATGAACTAAGTGATACAGGCGTTAAGAATCGTGCAGAAAAGACAGTTCATAAATGCAACCAGTGCGGCAAGGTTTTTAAGACCAAATACACTCTCTCGATTCACCTCAAAATGCCCGACCACACTCAGAGCCGACCGTTTGTCTGCAACGTTTGCGGAAAAGGGTTTCGGCTCTCCAGCACCCTATGCCGTCACAAGATAATTCACACCGAGAAAAAACCGCATAAATGTGAcgagtgtggcaagtgcttcaACAGGTCGTCTACACTGACGACTCACCTTCGAACCCACAGCGACAAGAAAGCGTTCATTTGTGACATCTGCGGAAAGGGCTTTCACCAGAAGGGAAATCTGCGAAATCATATCAtgatacacacaggagagaagccgtttaGATGCAACCAGTGCAATCGGGCCTTCAACAAGATGTCCAATCTGAAATTCCACATGCATACACACTCGGATAACTTGCCTTATCACTGTAGGACCTGCAGAAAACGCTTCTCGAAAAAGACTGATCTGAAAGATCACGTTGATGAAACTCACTAAGAAAGTTCGTTGGATCTACTCGGACAGAAAAATCACGAACtctgaagaaaataaactttaatgtAAACTTTAATGTATCCCGAATTTAATTCGGgaaatgaatttatcacttAATTTTATGACTTTGCTTCCCTCAGCaatttttcaagaaaactgtGACTCAGTAATTTTTCACTCGCGTGCAAAAGTATGcgcaaaaatacttttaaacacATCGTGTACCcacgaaaattaaatatttgcaCTTAATTTTAACACCATAATTAGCAATTATCGAAACTTTTAGGGCGACAGgccaaaaattgaatttttcatGCAAACGTAAATTACGGTAGACTCGGCCAAGCAGGCAAGTCGAGCCTTCAAGTTTCAATTGCTCAAACTAAGTACAACAATTGTGCTTTTCATACTATTTATTCACGATATTTTATAGCGACGAAAGCGAACATTTCGCAGAGCAATAATTCCTAACCAAATGAAAGGttaaaaaattttgaaaccaGGCAATGTAAATAATTTTCTCAATGGTATTTTCGCACTTAATTTTCTTAACACGTTCAGTAAATAACCCGTGGCAAAA

Protein

Uniprot

Uniprot term	Description
P85299	Proline-rich protein 5 OS=Homo sapiens OX=9606 GN=PRR5 PE=1 SV=1
Q8AVJ1	Proline-rich protein 5 OS=Xenopus laevis OX=8355 GN=prr5 PE=2 SV=1
Q5E9R0	Proline-rich protein 5-like OS=Bos taurus OX=9913 GN=PRR5L PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF08539	HbrB	HbrB-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR013745	Family	TORC2 component Bit61/PRR5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23226	ZINC FINGER AND SCAN DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan