Genomic Location: chr2:31915152...31933049
NR annotation: XP_020606641.1, protein PAT1 homolog 1-like [Orbicella faveolata]
| CDS | |||||
| ACROYT_G007070 | |||||
| Transcript |
| rna-ACROYT_G007070.t0 |
| Protein |
| KAL9984737.1 |
| Uniprot term | Description |
|---|---|
| Q3TC46 | Protein PAT1 homolog 1 OS=Mus musculus OX=10090 GN=Patl1 PE=1 SV=2 |
| Q5R8Q4 | Protein PAT1 homolog 1 OS=Pongo abelii OX=9601 GN=PATL1 PE=2 SV=1 |
| B5DF93 | Protein PAT1 homolog 1 OS=Rattus norvegicus OX=10116 GN=Patl1 PE=2 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01391 | Collagen | Collagen triple helix repeat (20 copies) | Repeat | Interproscan |
| PF09770 | PAT1 | Topoisomerase II-associated protein PAT1 | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR008160 | Repeat | Collagen triple helix repeat | Interproscan |
| IPR019167 | Domain | mRNA decay factor PAT1 domain | Interproscan |
| IPR039900 | Family | Pat1-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21551 | TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000290 | Biological Process | deadenylation-dependent decapping of nuclear-transcribed mRNA | Interproscan |
| GO:0000932 | Cellular Component | P-body | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0033962 | Biological Process | P-body assembly | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K12617 | PATL1, PAT1; DNA topoisomerase 2-associated protein PAT1 | - | Messenger RNA biogenesis | ko03019 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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