Gene detail

Detailed information of KAL9986753.1 in Oculina patagonica

Genomic Location: chr1:10377448...10386237
NR annotation: XP_020615411.1, platelet-derived growth factor receptor beta-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-ACROYT_G000943.t0

ATTTTCCAACACACGTCTTGTTCAAACTATATATAGAAGTTTGGAACGACAAGCGTAAGGTATTAAACACTTAATCCAGCTCCAATTGGTAGTTCTTGTTAAGTTGACCGCTTAGAACATTTGAGGTTTTTAAACCCACAGTTTCATAATGGTCATTATCTTTTGGTTGGAAAACAGGACAAAGTTTTTCTTGCTCCTACTTGTTActtcatttttcttatttttccttCCTCCTGTCAAGTGCCAATATTGCAATACCAAAGATAATGCTCCTCAAGTTAAAATCTCTTCAACTCGGTCACCTACTGGAACATCAATTAATCTGACATGCGAGGCGTCGCAAGCTGATAAAATGGCGCTGAGCGATCAGACAAAACCACGTTCAATTGAATGGTTTGATCCACAAGATAAACAAGCCAGAAAATGCAAGGCTGGATCGCCGGTAGCTAAAGTTATGAGCTGTACTTTGATCATTGGTGTACTTACGAAAGACACCGTTGGAAACTACTCGTGCAAAGCAAGCGATGGCAGATACCACTGCAGAACGAAACCATTTGAGGTTGATTTCCAAGGAGCAGAGTCAACAAACAAGAGTAAAgcacaaccaaaacaaacagTGTCTGAAAATTTGAACGCAACAACAGAATCAACAACGCAGAAGCATGAACCAACGCAAGAAAACGGAATATCCAGCTCCAGTAAAACACCAACTTACATCTTATATGCTGTCGCCGTTACTTTATTCCTGGTGTGTTGTTCCCTTTTGAGCTTCTGGTTAAACAGAAGAGCACAACGTGAGCTTATTAAAAGATCCACTTGTTCAGTTCGTGAAATAATTCCCCTTGATAAATGGGAAATTCTTCCGGAGCAAATAAAATACAACGAAAAACTTGGCCAAGGAGCGTTTGGCATCGTCTACAAAGCGACTTTAAAAGAACGAAAGGGAATAGAAGTGTTTGACAGTAGAAATGGACTAGAACCAAAGAGGGCATGCCAAGTGGTCGCTGTCAAAGTATTGCAAGATGATCCCAGCGACGAACAGAAAGAAGTTTTCCTACATGAGATAGCTCAGATGAAGTTGTTGGGTTCGCACCAGAACATCGTATCCTTGGTTGGTTGTGGCACATTGCAGGAGCAAAAGTTCCTGGTGATAGAGTACGTTCCGTTTGGTGACTTGCTGCAGTGGTTACGAAACAGGAGAAAATCGATAAATCGACACGTGACTACTGAAGAAAAGGGGAAGAAGGGACATTGTGATGGCAGCGAAACTTTTGATGATCTAAGAATTAAATCTGTTGAAATACAGATAACTGAAGATCAGGGACAGACAGAGCAAGCCCCGCTGATTATGAAATTGTGTCCATCAAAAGATACAAGAGATGTCGTTCTTGACcaaaaaagtgaaaatttccttgatgAGTCGACGCCATTGATGTCACATGGAAATAGTGACGCTGCTGTCATGTTGCATCTTGAGGATAACGACAAGACAGCAGACAGCTTTACCACACAACAGTTGTTTTCGTTTGCTTGGCAAATAGCAAGAGGAATGAATCATCTCGCcgaaaaaaatttcattcacCGGGACCTGGCAGCTCGTAATATTCTGGTTGGCAGCGATAATCGAGTCAAAGTGTCAGACTTTGGATTGATGCGTCAAATCTACGAGGACGTCGTGGACAGCGGGAAAAAGCGTACAAAGCTTCCGGTGAAATGGATGGCTCCTGAATCGATTTTTCACCAGTCGTTCACCATCAAGAGCGATGTCTGGTCCTACGGTATTGTTCTTTGGGAAATGGCAACCATGGGCGGTGTTCCGTATCCCGCATTGACCAATTCTGAGCTGTGTAGACTACTAAAGACTGGTTATCGCATGGAAAGGCCCCATATGTGTTGTGATGAAGTACACGAACTGATGACTGAATGCTGGAGGGAAGATCCATATCTTCGCCCGAGTTTCTTACAGTTGATTGACAGACTGGAGGTGATTATGATGAGGGATGTACCATACTGTGACTTGAGCAAGCACGATGAGTCCAGATCATACTACAACGTTCCCGCCAAAGATGTTGAAAATAGCGGATAAGAAAGTGACAATAAGCATTGTTGTACCAATTAAAAGACCAACAGTACTAAGAACAATACtaactttattttaattgtttctCTTGTggtttatgttttgttttggttgaaAAAATTTTCAAGCCAATTTGACATAATATTTCCTTTGTTCCAGACTATGGTATCCTAATAAATACGAAACATTGAAAATCGAAACCAGGACTAGAAATGCTAAGTGGTAAAACGGGCGGTAGGCAATTGATTCCACAGCTTTTTGAGTTCctccaaactttcacgagtgtctTTCAGCTACGATAGAAACACgcaaaatgttttctattttcttt

Protein

Uniprot

Uniprot term	Description
Q8JFR5	Mast/stem cell growth factor receptor kita OS=Danio rerio OX=7955 GN=kita PE=2 SV=2
Q9DE49	Platelet-derived growth factor receptor alpha OS=Danio rerio OX=7955 GN=pdgfra PE=2 SV=1
P35969	Vascular endothelial growth factor receptor 1 OS=Mus musculus OX=10090 GN=Flt1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13895	Ig_2	Immunoglobulin domain	Domain	Interproscan
PF07714	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001245	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR050122	Family	Receptor Tyrosine Kinase	Interproscan
IPR020635	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR000719	Domain	Protein kinase domain	Interproscan
IPR008266	Active_site	Tyrosine-protein kinase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24416	TYROSINE-PROTEIN KINASE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0004714	Molecular Function	transmembrane receptor protein tyrosine kinase activity	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0007169	Biological Process	cell surface receptor protein tyrosine kinase signaling pathway	Interproscan
GO:0007275	Biological Process	multicellular organism development	Interproscan
GO:0033674	Biological Process	positive regulation of kinase activity	Interproscan
GO:0043235	Cellular Component	receptor complex	Interproscan
GO:0004713	Molecular Function	protein tyrosine kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan