Gene detail

Detailed information of KAL9986964.1 in Oculina patagonica

Genomic Location: chr1:13185520...13189858
NR annotation: XP_029184201.2, uncharacterized protein LOC114952389 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-ACROYT_G001183.t0

AGACAACCTCCGTTCATGTACCGGCTGTAAAGGAGGAGAGCGTTACTTAAATATTGCTCAAGGATGGAATATGCAGGACCAGGTGGTTTGAATAAACTTGGAGGTGCTTATATCAACGGCAAACCACTTTCAAAAGAGATTCGGCACAAAATCGTCGCTCTGGCTCTTCAAGGAGTTCGTCCTTGTGACATAAGCCGTCGTTTACGAATTACTCATGGCTGCATTAGTAAGCTGTTGTCCAAGTATCGCAAAACTGGCTCAATCCAACCTGGTGGAGAAGGAGTAGGCAGACCCCGAGTGATCACACCTTGCATAGAACAGAGAATCTTGGAGTACGGGAAAGAACAACCAAGACTGTTTTCCTGGGAGATACGAGATCGTCTTGTTCAAGAAAGCCTGTGCAGTAAAGAAAGTCCTCCCTCTGTTAGTTCCATCAGTCGATTGTTGAGAAATAACGATAAATTGGAATCAGCGTCAAGAATAATCCAAGAACGTAGCAGTAATTCCTATATGATCGCAAGCATCTTAAACCTACCATGTAACGGGCAATCTTCCTCGTCGATTCCGTCGTCGGTGGCTCCTTCTTCTTTAGATAGCAATGGGAGAATAGATGAACATAAACCGACAGAATTGCTAcagttagctctcaataatggtaatggtgTATCATCAATGGTATCATCAATTTACATAATGGCGGTCGGTCATGTTGCGACAAGCTCCCGTTATTTGACGGCTTTGTTGGTTTTGTGTATCGCGTTTTTTATTGGGAACGAAATCTACTTCTCAAGAAACGTACTGGAAACCTGGAAGCACCGAGAAACGACCAATGTAACCAGCTATCAGACGAAATTTGGATCTCAAGTCGAAAGTACACAAAGACAAAGACCACGTTGCCGCGGAAGACGATTTCTTCATTGTCGAGTGCGTCACTCAACTGATGAGCGGAGTTGGTTTAACATCCAACGATTGGAATGTTCTGGAGATATTCACCTTAATCCAGGCCCGACAAAGCTAAAGTTTCCCTGTAAGGAATGCGAGAAGAGCGTTCGAAATAATCAGAATGCGATGTTATGCTCTGAATGTGGCTTATGGATTCATGCAAAGTGTCTCAACATGTCTGCATcgacttttaaatattttcttgaacGACCAGCAATCGACTGGACTTGTCCGCTATGTTCTCTACCGAGATTGGGAGACTCATTTTTCCTTGAGGATGAAGAAATAATAACTACCGAAGGAAACTATGCAAATCAACTTCTTCTACAACCAGATGCAAATGAGGCGAATAACACACTTATCCACTCCCAGGAGAATGTGGCAATTAACAATTGCGGCCAACAGGAATTTGATCTGCTCTTGCAAGAAAGGGAGGAACAGTCCAGTCAGATACTAATGTTCCATCTGAACATAAACAgcttgcaaaataaatttgaagaaCTGAAACTCCTGAATGATAAAATGAAGTcgcaaattatttttctctcaGAGACAAAGATCGACAAGTCCTACTCGAACAGCCAGTTCACCTTAACGGGCTACAACATGTATCGAAAAGACAGAAAGAAAGGAGGCGGTGGGATAATAGCCTATTTTGATTCTACTTTACCCTCGAAAGAGCTAAAAGTaacgaagaaatacaaaacaatcGAGACTCTTGCAATAGAAGCTAGACTTGGTAAAAACGAAGTCATTTTCCTTGGGATATACCGACCCCCAACGCAGTCGGATCACCAGCCAGATCCACACTATTTAGAACGAGTAGAGGAGGAACTGAATGACGTTTGCATGTGGGCTTCCCTCAAGAAACAGATATTTATCCTCACAGGTGACCTGAACCTCGATAGACTAAAACCAAAAAGCAGAGAAGGGAGAATACTTGCTGACCTAGAAGAAGTACATGGAATGCAGTGCCTAATTACCAAGCCTAATTACCAAGCCTACGAGGATTACGCTGACATCAGAGACACTGCTGGACGTTATTCTAACCAACAAACCCAACCTTTTCAGGACTAG

Protein

Uniprot

Gene family

Uniprot term	Description
Q90268	Paired box protein Pax-2a OS=Danio rerio OX=7955 GN=pax2a PE=2 SV=2
Q02962	Paired box protein Pax-2 OS=Homo sapiens OX=9606 GN=PAX2 PE=1 SV=4
Q06710	Paired box protein Pax-8 OS=Homo sapiens OX=9606 GN=PAX8 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|PHD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00628	PHD	PHD-finger	Domain	Interproscan
PF00292	PAX	'Paired box' domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001523	Domain	Paired domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR019787	Domain	Zinc finger, PHD-finger	Interproscan
IPR001965	Domain	Zinc finger, PHD-type	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR043565	Family	PAX family	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45636	PAIRED BOX PROTEIN PAX-6-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan