Gene detail

Detailed information of KAL9988184.1 in Oculina patagonica

Genomic Location: chr1:30290196...30300844
NR annotation: XP_020626985.1, kelch domain-containing protein 1-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-ACROYT_G002595.t0

ATGGGTAACGAATCTTCCGCACCGGTTACTTATGGGACAAAGCTTCTTAATGACGTAAATATCGAATGGAAAAAGGTCGAAATGGACGCCAAATTGCCATCTCGAGACGGACATTGTGCGACCGCCATGGCGAACAGACTTTATGTATTTGGCGGGGTTCGTTGGCTTTCTGATATCGGCGAAGCAACAGAATCGAACGAGGTTCTTGTGTTCGATACTGATACTCACACACTGAGCAAGATTGTAGCAGGAGGTGAAGTCCCATCAGCCAGGTCCTCTTCTACAATGGCTGGAGTAGGAAGCAAACTGTTTGTATTTGGAGGACTAAGCCGAGATTGTGGATGGCTAAATGATCTGTATGCCTTTGATATTGAAACAAAGCAATGGGAAAATATTGCATATAAAGGTACTCCTCCATCGCCGCGTGACAAGCTGACTTGTGTTGCTATGGGAACCAAGATTCTGTTCTTTGGTGGCTTTGGTCCCATGGAAGATCTCGATACAGATGCCACCGAACCAGATCAGGCACAGTTTGGATGGTTTAATGATCTCTTCAGTTTTGACACAGAGAATTGTACATGGGAAAAACTGGCTCCTTCATTCACTGGATGTCCAACACCCAGAGCAGCTCATGGCATGTGTGCTGTTGGATCAAAACTTGTAATCTTTGGAGGCAGAGACAGTGTCGGCAGGAAGAATGACCTCTACATTTTGAATACAGAAACAATGGAGTGGATCTCAACACCAACCACAGGGCGACAACCAGAGCCTCGTTCATTTCACACATGCACTGCCGTTGGCAACAGAGTGTTAGTTTTTGGTGGAAGAAGCCTGGAAAATGCACATTTTGATGATCTTCACATATTTGACACAGACACAAAAGAGTGGCTTCAGCCATCATCATCTGGTAACAAACCGCCTGCCAGGGGGGTGCACACGGCAACACTGGTGGGAGACCAGTTCATACTGTATGGAGGTTCTTCTGATTTTGACCAAGAAACAATGCAATGCCAGGAGTATTATGGGGATGTCCATCTTATCGAAAAAGaaCAACTCTTGTCAGGAAAGTCTCAAGGTCCAGATCCCAATGATGTTCCACCTGTTGCCGTCCAAGGTCTGTCCATGGCCAGTGGGACTGCTAATGTTCAAGAATGTGAAACAATTGAGGAAGAAGACAGTAGTGAATATGAGGAGTCATCAGATGAACAACAGTGATAGAAAAAATGCACTTTTTGTTTTGGCACACAGTGCTGAATCACCCCTCAGTCTCCATCTAAGCAAGCTGGCAGTACCAGTGTTTTGTTGCTAAGCGGCTGTTTGAGGGATCGGATCATGTGCAGGAGAATTGGGAGCATTGGAAAGGAGACCAAAAGTAGGACTAGGGTGCAAAGGGGAATTGGGAATGCTAAAAGGTGGCAGATGCAGGAGGTTCTTAAAGGAGTTAGGACAAtgtgcgagccagcgagccatgcgagcacgaaatcccaaatcccaataaaaggctaaccgcaagctacctaaactaactgtaggctaaccagagtactatttaggctaaccaatgtgctatttaggctaacctgaatggctcgcatgactcgcgaggcatgcgagccatgcgagccagaaatccctaatcccaataaaaggctaaccgcaagctacctaagctaactgtaggctaactagagtgctatttaggctaaccgaagtgctatttaggctaatcaatgtgctatttaggctaaccgaaatggctcgctggctcgcacaTTGGCAATACCCTTCTTAAAGTGCTTTAATTATTTCCCTCTAGCTTCCATCTTGCCACTTTTTGACTTGCACCAATTCTGCTTGCAAGCTCCTCTACAACTGGTCCAATTTAGGTAGTGGTCACAACACAAAAATGCCTACACTTTCTGTAAAGGCAACCTCTCAGTTTGTCTATTTGCTTTTGCATGTTAGCTTTCTGGGTGGTGTTAAGAAATGAGAAGAACTCAGGCTTTTTCTGGACTTAAATTTGCTGTGAACCTTAGTCGTACAATATTTATAGTAACTTATCATTAATTCAAGATTTTTGGTGGATTGTGTGAATGGAAAAGCTACTCAGATATCTTCCAGACAATcaacaatgggcgtcaaaagtccttgagacagttggatgaaataaatactaatttaaaattcctgtTTTTCCACCTTTAATATGCTGCCGCTtttgaaccactccccctccccctttttcaatgttgtacacaaacgaggcaagtcttgcagatagcaaatccagcattgtttcggggggagggggtaatattgaaggggtgaggggtaaaatttgtccaaggtactcgaaaagtgccgactgtctcaacacttttggcgcccaTTGAAGATTTTAGCAAATGTTACACTACAGGGTTTTACTTAATCTTTGATCAAGACAAGTTTTCTCTTTACTTCCCATTTTTACAAACTAACAGACCAATGGGATCTCTCATGTAAAATCTGTAAAAGGTACTTATTATACGTAATGATCTTCTCTTGCTAATTTAGTAATTGTGTATATATAATATGGCTGTATGGTGTACTGTCAAGACTTGTTATAAGATGTATGatgttttttagaaaaaaataaattttgacttTTAAAACGTC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01344	Kelch_1	Kelch motif	Repeat	Interproscan
PF13418	Kelch_4	Galactose oxidase, central domain	Repeat	Interproscan
PF07646	Kelch_2	Kelch motif	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006652	Repeat	Kelch repeat type 1	Interproscan
IPR015915	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR011498	Repeat	Kelch repeat type 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23244	KELCH REPEAT DOMAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan