Gene detail

Detailed information of KAL9988509.1 in Oculina patagonica

Genomic Location: chr1:34650076...34656917
NR annotation: XP_020627695.1, probable G-protein coupled receptor No18 isoform X1 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-ACROYT_G002963.t0

CGAAAAACCAAATTATTGTGACTCATAGCGATTCTTGTCAATTGAGAAGCAATTCGTGCGCTACAAAGACAGAACAGAAGAGAGCTTTTCTCCAAGAAGAGGACCTAAGAACTCTATTTCAATGGAAAATCCAAACGCATCAAGGACAGAAGAATTTCACGCTTATAATCCTACGACCGACCGGTGGTACTGGACACTGCGAGTACTCCTGGCGGTTTTTACAATTCTCGGAAACGCGCCGTTGATATTCCTCCTCATAACAAGGCGCAGACTGCGACGAAACCTGTCAAACCGGTTTGTCCTGTCCTTAAATCTAGCGGACCTATGTGTAGGTTTGTTCGTGACACCGCCTGAGCTACTTTGCACATACTGGATGGAGTGTTCCAGACGGATTCAGCTTGCAATGTACGAGTTTTTCGTCTATACATCACTGCTGTGCCTGTGCGTGGTGACCTGGGACCGATATAAGTCCGTCACTCGTCCGCTGACCTACCCTGTTGTGATTGCCGTCAAGCAGTACATAATTCCCATCATCCTGTGCTGGAGTGTTCCTTTTGTGGTGACGATCCTTCACTTCACGTATCTGGTCGAAAAACCTGAAGATCAGGGGACGGGCATGAAGGTGTTTGCAATAGTTGAGACGGTTTTGTTTGTTGGGCTCCCTTGCCTTGCATTACCTCTGGCTTATTTACACATCGTCTGCATCATACAGAGACACAAAGAACGCGAAAAAAGAATCAAAGACCAAGTCGATTTTAATTATTCCACTGCCATGAGCGACGAAGATGCGTTAAGAGAAACGGAATTCACCGCTTCAAATCTAACCGCGCCAAACGCGAGGGACAGATTGCAAAGCGAGATGTCGAGTGTTGGACTGGACTCTGATATTGAACGCTCCACGGACGGCAGAACGGTGCCACTGAAGACAAAACCGAGACATCCGAACCATGATCGTTCTATCACTGTACTTGGTATTGTGATTATGGTGTTCGTTGCCTGTTGGGCGTTTGCAGCCTATCTTCATTTTAAACAATCTTTTAATGTCACAGAAGTGGCTGAGATCGCTCACTCAGCTGTAGACACGCCCATGAATTTGTCCTGGTTATTCCTTCTCGCTCACTCGGCCGTTAATCCTTTTATCTACGGGCTTGTTAAGAGAGACATAAAGAAGGAACTGACAAGATGTCTGACATGTCGGAAATAGAAGACGAAGAAATACATGCCCTTCAGGCGAAATTGAAAAagtaagactaaaactgcaagggaccgcaaacgataatgctgctattccGCTATTCATAGGatctactgagagatctgatcagcaataaaatgaaaaaacaaacaagactggaaggctgatcatactacgtgaaaagtaGATTTTGCGAGACACTCACACGACTAGAACCGCTAGCGCAGGATTGCAATCGTGGACAGCTGTTTTGTTCTTATTGGAGCTCTTCAGCACGGTGTAGCAAATCTAAATGACACATAAATTGCCCAATAAGCCGTACAttgtatcaagttccgtactttgaactCACTCGCTTGTCTCCCGAATCACGCGTTGCCACATTACGTGTTTCGGGGGACAAGAAATCCAGTGTCACGATGTAGTCTTGCAAATAATAAATGGGCAGGATAACACCAGATAGTTGAAAAATATCAAAACGAGCTCCAGTAATTGACGGCGAATGAGATTATCAGATTACGcgaataaattataaaaagaaCTTAATATATTCAAAATTATGCCTTCATAATGAGATATTATGAGATATCAATTAATCTTTAGATTCGGTTTCTGCATAACAACGAGAATATTATATAAATTCTTGATTAGCGCACCGAAACAGGATCCTAAACGCCAGGTTATTTAATCCTGCCTTATGCTAGAACGTCGAGTTTCGATGACTCGCTTCCCTGGACTGATTGCAGAATCGTGTTAATATTTAAAACTGGAGTTTTGTACAGTATAGCCGTTTTTGTcgtgcgtttgtaaatgttTTTCTACCAATTTTAGCGTCAAACTATAAAAAACTTGAATATTACTGAGCTTCGTTTCGGCATGTCGTGTATAAAACTGCGATGCTCTACACCATAGTTGATAGTAGAAGTCCTCTCTTCTAACTATGGTCTACACTTAAAAATAACATGGATAAATCTATTGCCTGTACATTGAATCTTTTACAACTTATTATGAGGAACTGAAAGAATTTGTAATATATAAACTATCGAATAAAGACGAGCATTA

Protein

Uniprot

Uniprot term	Description
P08911	Muscarinic acetylcholine receptor M5 OS=Rattus norvegicus OX=10116 GN=Chrm5 PE=1 SV=1
Q920H4	Muscarinic acetylcholine receptor M5 OS=Mus musculus OX=10090 GN=Chrm5 PE=2 SV=2
Q5IS53	Muscarinic acetylcholine receptor M5 OS=Pan troglodytes OX=9598 GN=CHRM5 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00001	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017452	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR000276	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR050569	Family	Trace Amine-Associated Receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24249	HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan