Gene detail

Detailed information of KAM7427516.1 in Porites harrisoni

Genomic Location: Scaffold0773:102737...112868
NR annotation: no NCBI-NR hit recorded
Species Porites harrisoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-g21874.t2

GGTTGTTGGTAAGTTTCGGCCGGGAAGTGCCATCGATACGTGCATGTAGAAGTGGACGATGTTGTCTGCACGAAAAGCGGTCAGTATTCCAACTGGCTCTAGACAGGTGTTACCTTCAAATCTTTCAAGATATGGCTTTCGGTGGCTCAGCTCAGAAAGTCTTCCTCCTCACACAAATGTACCATTACCAGCACTGTCTCCCACAATGGAGATGGGCACAATTGTCAGCTGGGAAAAACAGGAAGGCGATGAGTTAAGTGAGGGAGATCTTTTAGCTCAGATCGAAACAGACAAGGCCACAATGGACTTTGAGACTCCTGAAGAAGGCTTTCTGGCCAAGATTTTAATTCCTGCAGGAAGTAAGGATATTCCTATTGGCAAACTGCTCTGTATAATTGTGGAAAATAAAGATGATGTTGATGCATTCAAGAACTATGTTCCTGAAGAAGATGGACCAGCTGCACCACCAGCTTCAGTAAGTAGTGCAatcaatattttcttttcttccagcTCGCAGATTCAACATACTGATTGTAAAGCATGCTCCCTTGTCCCCTGTTTTCTTATGAAAATACAATCATTTAAAGACAATTTTCATTTCAGAAGATTGCTAGAAAAAGGCATTGAATTGGCTGCTCTACAGGGTAGTGGTCCCGGTGGCCGAGTGGTGGCACAAGATGTTACCGTGGCAACACCTGCTGTCGCAGCAGCAGCACCCACTCCTGTGGTTGCACCTGGAGCAGATTTTACAGATATTCCTCTTACAAATGTCAGGAAGGTCATTGCTAAACGGCTCTTGGAATCCAAGCAGACAATTCCTCATTATTACCTTTCAGTGGATATCCAAGTGGATGATTTGTTAGAagtTCGAAAGCAGCTGAATTTGGATTCAAATGGTGCATACAAACTGTCAGTGAATGACTTTGTACTTAAGGCCTGTGCTCTAGCTTGTAAAAAAGTTCCCGAGGCAAACTCTTCGTGGATGACAGACTTTGTAAGACAACACAATAATGTTGACATTAGTGTAGCTGTCAGTACGGAATCAGGACTTATTACACCGATTGTCTTCAATGCAGATAAAAAGGGTTTACAAGACATAAGTGCTGACACCAATACTCTAGCAGAGAAAGCCAGGGATAACAAACTTCAACCTCATGAATTCCAAGGAGGAACAATAACAGTATCAAATCTCGGCATGTACGGAGTCAAGAACTTTTCTGCAATCATAAACCCACCTCAAGCCTGTATATTGGCAGTAGGAAAAGCAGAGAAGCAAGTTATAGTTGATGAAAATAGCGAAAAGGGttACACCACTGGAACAGTCATGTCTGTTACTCTCAGCTGCGATCACCGAGTTGTAGATGGCGCCGTTGGAGCGCAGTGGCTGTCCGCTTTCAAACACTATCTAGAAAAACCCCTTACAATGTTGTTGTAAAATTCGACTTGAATAGAGCCTATCGTAGTTCTtctgaatttttatttcaactCGGGtagaaaaattgttaaaactGCTGGAAAGAGAGCCTTAAAATAGAAAACCGTGTGTCTTGTTTAGAAGAGATGAAGTaggtaaatttattttttgtatgtttGTATTTTTACAGACGTATACGTGGTGTTAGgacttttttctgtttgttttccaAAGTTCGTGCCTTTAGAAAGCAAGCACTTACAAATTCTTTAGGCCTTATCCGTTGTTTTTACGATGTTTTGAAGTCCATTTTTGCAAGGTCTTCATATTTTAGGTAACTCTTTCTAGCTGTACTAATGGTCTCTCTAGCCGAACGAAACATTAACAATTTAGGGAAAAATACCATGAGACGCTGTGTTCAACCGGACGGGTAATCCTCGAATGAAGAATGATTAAGGTTCACGGCAGCTTTATGTGAGCGCAAAAGATGCCAAGACCTATACGGTAAGAGGTTTGACATGATTACGGTGTCGATACTGTGGTGTTTGGGAACAAACTTTAAATGCTTGAAGTGGAAGGTAAGACAGTCTATCGCGATTGATAAGTTTAATCAACCAAATGTGTATATTTTTAACCAGACTTGGGCAGaacaaataaagataaaaaatgcCTTGAAATGTGGCTTGCTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00198 all species →	2-oxoacid_dh	2-oxoacid dehydrogenases acyltransferase (catalytic domain)	Domain	Interproscan
PF00364 all species →	Biotin_lipoyl	Biotin-requiring enzyme	Domain	Interproscan
PF02817 all species →	E3_binding	e3 binding domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023213 all species →	Homologous_superfamily	Chloramphenicol acetyltransferase-like domain superfamily	Interproscan
IPR011053 all species →	Homologous_superfamily	Single hybrid motif	Interproscan
IPR006257 all species →	Family	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex	Interproscan
IPR001078 all species →	Domain	2-oxoacid dehydrogenase acyltransferase, catalytic domain	Interproscan
IPR000089 all species →	Domain	Biotin/lipoyl attachment	Interproscan
IPR004167 all species →	Domain	Peripheral subunit-binding domain	Interproscan
IPR045257 all species →	Family	Dihydrolipoamide acetyltransferase/Pyruvate dehydrogenase protein X component	Interproscan
IPR003016 all species →	Binding_site	2-oxo acid dehydrogenase, lipoyl-binding site	Interproscan
IPR036625 all species →	Homologous_superfamily	E3-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23151 all species →	DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004742 all species →	Molecular Function	dihydrolipoyllysine-residue acetyltransferase activity	Interproscan
GO:0006090 all species →	Biological Process	pyruvate metabolic process	Interproscan
GO:0045254 all species →	Cellular Component	pyruvate dehydrogenase complex	Interproscan
GO:0016746 all species →	Molecular Function	acyltransferase activity	Interproscan
GO:0005967 all species →	Cellular Component	obsolete mitochondrial pyruvate dehydrogenase complex	Interproscan
GO:0006086 all species →	Biological Process	acetyl-CoA biosynthetic process from pyruvate	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00627	DLAT, aceF, pdhC; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase)	EC:2.3.1.12	Lipoic acid metabolism	ko00785	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.