Gene detail

Detailed information of KAM7427564.1 in Porites harrisoni

Genomic Location: Scaffold0766:196091...212463
NR annotation: no NCBI-NR hit recorded
Species Porites harrisoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-g21828.t1

CTTTttctgatttcttttcttcGCCGCAAACAATTTCCTCAATAGTTTCATTGGATTTACCTTGTTTCGTCTTACCTGGAAAAAGCGGAAATGAATTTTTGCTTTCTCAGAATTCGAGAGATGATTTTCATTGGTTGAACACTGGAAAATTTTGTTGGCTACGTCATGGTTATTCCCCTACAAGATCAAGCAAGTCACGggaaaggcaaaaataaacGAAAACCTAAGGGTCGAGGTTCTGCTGGCGGCGGacgaggaagaggaagaggacAAGAGCCGTTGTCTACTCCAGGAAGAAGCGAAGGTGCATCAAAACCTCGTGATGAAAGGGAAGAAATTGCTCACCAGTTTgctgaaggagagaaaaaaCCAGCGGCAAGTGCAAGTTCTCCTGCGTCAAAAGCAGAAGAAACACTTGGGGCTTGTTCATCTGTTTCAGAAACAAAGAACCCATCGCGACCTTCAGCGGAACAAAAGGCAGATGTAAGAGATCTTTCTGCAAAAGAGCCTGTTGTCTCATCAGATAAAAACATACCGACATCTGAAGCAACACAGGGAAAATCAAGGCAACAGCAGCCCAAACAATCTAAGGGAAAGTCACCCATATCTTCCTCCCCGCCAGACACTAAAGATAAAGCTGGAGTGCCACAGGCCCAAGCAGCTGTAGGAGCCAGTGCTTCTGTAACTGAACAAGATGTGAATAAAGTGGCAGCCAAGTTTGGATCTGGATTAAGTACTGGAGAACATGCAGCTCGCCAAATGCAAGAAAATGGAAAGCTACGCCCTCCAAAAAGACCTGGCTATGGTACTGTGGGCAGACCAATAAAGTTAAGAGCGAACTTTTTCCGAATGAACATTTCACCAAGGCTGTCAGATCTCTATCACTATGATGTTGAGATAACACCAAACAAGTGCCCTCGTATGGTGAAAAGAGATGTTGTAAATCAGATTGTTATGAAGTATCGAAGTACAGTGTTTCAAGGCCACGATCCAGCATTTGATGGAGAGAAGAACCTCTACAGCAGGATAAAGTTTCCTACTCCAGCTGAACTTGATGTAACTCTGCCTGGTGAGGATGGTGGCAAGGACAGAGTATTCAAGGTTAAGATCTAGTTTTCTGCCAAGGGCTTTTATAAGAGTCAAGGTGTCATTGAATTTGTTAGTGAAACCTTGCAGCTATCACCCCATCAACTTGAAGACTCCAGGTGTCAGATTGATAGATGGAAGCTTGAGAAGGCTATACGTGGTTTACGTGTGCAAACAACTCATGTGGCCtcaataaaaagaaagtatACAGTTTGGGGAGTGTCCAGCCAGTCTGCAGAGAGGCGAGAATTTGACGTGGAAGGTGAAGCTACTGGCCGCCGTACAAAAACAAATGTGGCAGCGTATTTCAGGGAAAGATATAACATACGGCTGAGGTTTCCACACCTGCCCTGCTTGCAAGTTGGCCAGAAGAAAGACCGTTACCTGCCGATGGAAGTTTGCACCATAATTCCTTGCCAGAAGCGGCACTTATCTGAACAACAGACAGCGAATATGATCAGAAGTACAGCACAACCTGTACCTGAACGACGACAGGACATTGAATATTGGGCTCAAGAGTTGATTAGGACCAGTCAGAAATACTTGGATAAAGAGTTTCAGACCACTGTAGACCCTGAAATGGTGAGGGTTGACGGCCGAGTGTTACCAGCACCAAAAATAAATCTTGGACCACAAGATCAAGCGTTGGTTCCTCGCGATGGCTCATGGGATATGCGTGATAAGGCTCTTCATCAAGGAGCAGTAATTAACACCTGGGCGATGGCTTGTTTTGCACCTTTCCAAAGATGTAATGAAAATCAGTTGAGGAACTTCTGTAGGCAGATGGCAACTGTTTCTAGCAGAGAAGGAATGAGGATGACTGATCCAGTTGAGGTCAGATATGCACGGATCACAGAGGTACAAAGTTTGTTCTCCAAATGGATGGTAGAGTACCCAGGACTCCAGCTTATCATGGCTGTTCTGCCTAACAAAGATAAAGACCTTTATGCCGAGATCAAACGTGTCGGAGACAATGTTTTCGGAGTTCCAACGCAGTGTGTTCAGATGAAACTTCTTCAGCAACCTAAAGGTCAAGCCCAAGTGTGCGCTAACCTCTCACTTAAGATTAACTCCAAATTGGGCGGAATCAATCAGGTTATTGATCCCTCAGTACAGTCGCCTAAGCTGGGGAAAACCACTATTGTTTTTGGTGCTGACGTCACGCACCCTTCCCCCACTGAGAATGGTATTCCATCTATCGCTGCGGTGGTTGCGAGCATGGATCCTAATGCTACCAAATATCAGGCTCGAGTTCGCGCTCAAACGCATGAGAAGGGACGTGGAGCGCAGGAAATCATCAATGACTTGGCCGTTATCGTAAAAGAGCTTCTTATTGAGTTCTACAAAGCTAATGCCAAGTGCAAGCCTTCTAGAATCATATTTTATCGGGATGGAGTCAGTGAAGGCAAGTTTGATCAGGTCCTTGTCCACGAAGTGCGCGCTGTTCAAGAAGCTTGCATGAAGCTTGAGAAAGAGTATCGTCCCCGGATCACGTTTATTGTGGTTCAGAAGCGACACCACACGAgattattttgtgaaaacagCAGAGATGAAACCAAGAACAGAGCCAGGAACGTACCTCCGGGAACAACAGTGGACAGTGGAATAACCCATCCATATGAGTTTGATTTCTATCTGTGCAGTCACTTTGGTATTCAGGGAACAAGCCGACCTACACACTATCACGTGTTGTATGATGACAATGGTTTTGACGCTGACAGTCTTCAGCAACTCACTTATCAGCTCTGTCACGTGTATGCACGGTGCactaagagtgtgtccatgccAGCCCCTGCGTATTACGCGCATCTAGCAGCTTTCCATGCTCGGGTCCACGTGACCAATGGTGGAAGTGGCAGGTGAGTTCCCCAAAATATGCTTATGATAACTTTTATGTTCTCCATAGAAATGttagaaaaagtaaaataatgtcCATCATCTTGTGAGCGTGAGACaaagtagcctgcgagcaagttctcctatttgggcaagcgaagcgaggcgcGCGGTGCCGCGTCTCCTCGGGTGTCTTTCGCGCGTCTACTTTTTACGATATCCCCAAATGGAGAACTTGTTACCAGGCTACAGACAAAGAAATTCTGATCCCAGCGTGTTAAAAGTGGTACCCccgagggaggggggggggggggggagaggggatACGGACAGAACAAGGGAGTGAGGCACTGAAAAAGCTCACTTTATAGAGGTAAAACAATTACTGGTAAACCATTTGTTTTCATCATGACCCACAAggttaaaaatcccaactgaacaaaaaaaaaaaaagaaaaatgcactTTATGTGAGTATCAATGTATTTAGTacaaaagtactaattgggacactatattttacgtctccaactggagacgggaccgccattttacgtggtcatccgagccacacGAAGGTCTAGCCtgttgcagtgcaaagggagtaccttcatttctcggttattttaagaccctgagtattggtccggccccaggaatcgaacccgcgacctcccgctctgcagtcacaCGCTCTACCCACTGAGCTAACACTGCAGCGGTTAAGAAACATGTAATTTATGTGTGTAGAGTTATTGTGTTACTTATTTTCTGTCATGGTCGTGATGGTTTGCTAAAGACTCCATTAACAGTCAGTATGAagccaaggctgtgctctaaggaaaattgaagggagcccagtgctctgaaactgtacaatctagggtgcccagcatatgatttgcatgaaaaaactaagattttctagtcgcccaagGGTAAACgttaggcgccaggggccaccgggctctgctagagcacagccctggaAGCGCGAGAAAATAGAGCAGGTGGCAGGCGGGAAAGCATGGCAAAATTACGGCAGCTTTCAGTAAAGACAAGGGAGCTTAAATAAGCAAAGATTTTCAGGTTTTGAGCAACACACATCACCCGGAAGTTTTGCATTCTTGAGGAGTGGTTTGGCCCAAATTTTCGGGCAAGCCGTGTATATGAGGTTAAAGACACAAAGGAATACAagtttggtagcgtcaaggcggtcgtcacttgtttccatccgccaaactgacaTTTTCCTCGCAGTGGCTCTC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16486 all species →	ArgoN	N-terminal domain of argonaute	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032474 all species →	Domain	Protein argonaute, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22891 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 2C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003727 all species →	Molecular Function	single-stranded RNA binding	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0016246 all species →	Biological Process	regulatory ncRNA-mediated post-transcriptional gene silencing	Interproscan
GO:0035198 all species →	Molecular Function	miRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAM7427564.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.