Gene detail

Detailed information of KAM7427649.1 in Porites harrisoni

Genomic Location: Scaffold0758:182305...192885
NR annotation: no NCBI-NR hit recorded
Species Porites harrisoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-g21773.t1

GTTGATTTTCCCCAAATGTCCCCTTCTAgatcaaaatacaaaataaatgCCATAAATAACACCAATAACAATATCCGCGGAAAAAAGTAGGcacaatcaagaaaaaaaaacaaaaagggccGCGTTGATGTAGAAAGGAAGCAGCGTTTCCTTAAGGGGAGAGAGGGATGCTTTTTGAGAACGACACTGAAAAGCATTCTTCTTCGTATCGCTGTATCATTCCTTTCCTTTTGGAGCTCTCGAACTTCTATCGAGTTTTGTTTTCGTTACCCAGGAATATTACCTTATTAGAAACATGACATTATATCTAAGTTTGATTTTATTCTCTCCGTTTTTCCCCACAGAACAACGGAAGATATCACGGAGAAATACCCGCGGGAACCGGAAATGCGATACAATTCTTCTCTCACCTCCCCCGTCTGTAAGGAAATTTGTTCCACTTCCTTTCCACGTGTTTCCAAATATGGAAAAGAGTTGCACCATTTACTTGCATTGCCGGCGAAAGAAAAGCGCGGTTATTTCCTTCACCGAAAAAACTGCTTGATTTTCGCGGACCATTCAAATTGTATTCGAGGAATTAGCAGTGACTGACTTATATTTCTGTGCTGAAtccgttttcgagatatttgaCTCAAATATTTTTAACTGCAAGATCTTAGACTGTGAACCATGTCCGCCGACAACACGACCGAGGCAGCCGATAGAAATGTCGAAATATGGAAAATCAAGAAACTCATTAAAAGTTTAGAAGCTGCACGGGGGAATGGAACAAGTATGATCTCTTTGATTATCCCTCCAAAAGATCAAATCTCCCGTGTAGCAAAGATGTTAGCAGATGAATTTGGTACTGCCTCAAATATTAAAAGCAGAGTGAACAGGTTGTCTGTTCTAAGTGCTATTACATCAGTACAGCAGCGACTGAAACTTTATTCAAAAGTTCCTACCAATGGCCTTGTGGTTTATTGTGGAACAATTGTAACAGATGACGGCAAAGAGAAGAAAGTGAACATAGACTTTGAGCCTTTCAAACCAATCAACACATCACTTTACTTGTGTGATAACAAGTTTCACACAGAGGCACTTAATGCTCTACTAGCAGATGATAATAAGTTTGGTTTCATTGTAATGGATGGTAATGGTGCACTTTTTGGTGTCCTTTGTGGCAATACAAGGGAGGTTCTTCACAAGTTTACAGTGGATCTTCCAAAGAAGCATGGGCGTGGTGGACAGTCTGCTCTTCGTTTTGCTCGATTGAGAATGGAGAAACGTCACAACTATGTTAGGAAAGTAGCTGAGACTGCGGTACAGCTGTACATCACCAATGACAAGcCTAATGTTACTGGTTTAATCTTAGCTGGCTCTGCTGATTTCAAGAGTGAACTTAGCCAATCAGATATGTTTGACCAGAGGCTACAATCAAAAGTACTGAAGCTTGTAGATGTGTCATACGGAGGTGAAAATGGCTTTAATCAGGCAATTGAACTTGCTTCAGAGGTTCTTGCAAATGTCAAGTttattcaagaaaagaaacttataGGGAGATACTTTGATGAAATCTCTCAAGATACTGGAAAATTCTGCTTTGGTGTGGAAGATACCTTGAAGggATTAGAAATGGGAGCAGTGGACATACTTATTGTGTGggagaatcttgaaatcagtcGACTTGTTCTGAAAAATCACCAAACAGATGAGGAAAAGATCCTTCATCTTAATCCTGAACAAGAGAAAGACAAGACTTACTCTATTGACAGTGAGACTGGAGTTGAATTGGAGCTTGTTGAAAAGATGCCTCTTCTGGAGTGGCTTGCAAACAATTATAAAACATTTGGTGCAACGCTTGAAATCATAACAGACAAATCCCAAGAAGGTGCACAGTTTTGCAAAGGTTTTGGAGGAGTAGGAGGTATTTTGAGGTATCGAGTAGACTTCCAGTCGATGGAACTTGACGAGTACGATAACGATTTTAACGACAGTGACGATGATTAAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03463 all species →	eRF1_1	eRF1 domain 1	Domain	Interproscan
PF03465 all species →	eRF1_3	eRF1 domain 3	Domain	Interproscan
PF03464 all species →	eRF1_2	eRF1 domain 2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024049 all species →	Homologous_superfamily	eRF1, domain 1	Interproscan
IPR004403 all species →	Family	Peptide chain release factor eRF1/aRF1	Interproscan
IPR029064 all species →	Homologous_superfamily	Ribosomal protein eL30-like superfamily	Interproscan
IPR005140 all species →	Domain	eRF1 domain 1/Pelota-like	Interproscan
IPR005142 all species →	Domain	eRF1 domain 3	Interproscan
IPR005141 all species →	Domain	eRF1 domain 2	Interproscan
IPR042226 all species →	Homologous_superfamily	eRF1, domain 2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10113 all species →	PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003747 all species →	Molecular Function	translation release factor activity	Interproscan
GO:0006415 all species →	Biological Process	translational termination	Interproscan
GO:0002184 all species →	Biological Process	cytoplasmic translational termination	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016149 all species →	Molecular Function	translation release factor activity, codon specific	Interproscan
GO:0018444 all species →	Cellular Component	translation release factor complex	Interproscan
GO:1990825 all species →	Molecular Function	sequence-specific mRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03265	ETF1, ERF1; peptide chain release factor subunit 1	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.