Detailed information of KAM7428262.1 in Porites harrisoni

Genomic Location: Scaffold0685:14912...172040
NR annotation: no NCBI-NR hit recorded
Species Porites harrisoni · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002140 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00020
all species →
TNFR_c6TNFR/NGFR cysteine-rich regionDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001368
all species →
DomainTNFR/NGFR cysteine-rich regionInterproscan
IPR052135
all species →
FamilyTumor Necrosis Factor Receptor Superfamily Member 5Interproscan
IPR011029
all species →
Homologous_superfamilyDeath-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46875
all species →
TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 5Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0002768
all species →
Biological Processimmune response-regulating cell surface receptor signaling pathwayInterproscan
GO:0003823
all species →
Molecular Functionantigen bindingInterproscan
GO:0009897
all species →
Cellular Componentexternal side of plasma membraneInterproscan
GO:0023035
all species →
Biological ProcessCD40 signaling pathwayInterproscan
GO:0030890
all species →
Biological Processpositive regulation of B cell proliferationInterproscan
GO:0032735
all species →
Biological Processpositive regulation of interleukin-12 productionInterproscan
GO:0034341
all species →
Biological Processresponse to type II interferonInterproscan
GO:0035631
all species →
Cellular ComponentCD40 receptor complexInterproscan
GO:0035666
all species →
Biological ProcessTRIF-dependent toll-like receptor signaling pathwayInterproscan
GO:0042113
all species →
Biological ProcessB cell activationInterproscan
GO:0042531
all species →
Biological Processpositive regulation of tyrosine phosphorylation of STAT proteinInterproscan
GO:0042832
all species →
Biological Processdefense response to protozoanInterproscan
GO:0043123
all species →
Biological Processpositive regulation of canonical NF-kappaB signal transductionInterproscan
GO:0043536
all species →
Biological Processpositive regulation of blood vessel endothelial cell migrationInterproscan
GO:0045766
all species →
Biological Processpositive regulation of angiogenesisInterproscan
GO:0045944
all species →
Biological Processpositive regulation of transcription by RNA polymerase IIInterproscan
GO:0048304
all species →
Biological Processpositive regulation of isotype switching to IgG isotypesInterproscan
GO:0051092
all species →
Biological Processpositive regulation of NF-kappaB transcription factor activityInterproscan
GO:0051607
all species →
Biological Processdefense response to virusInterproscan
GO:0071347
all species →
Biological Processcellular response to interleukin-1Interproscan
GO:0071356
all species →
Biological Processcellular response to tumor necrosis factorInterproscan
GO:2000353
all species →
Biological Processpositive regulation of endothelial cell apoptotic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for KAM7428262.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Porites harrisoni tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Porites harrisoni, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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