Gene detail

Detailed information of KAM7429145.1 in Porites harrisoni

Genomic Location: Scaffold0599:54975...61931
NR annotation: no NCBI-NR hit recorded
Species Porites harrisoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ABFA07_019953

ATGGCGACAACAAGTTGCGAAGCGTTTTCCTGTAGGATTGATGGCGTTTTCGACCTGATAGAAGATGAAAAATTCGATTTTGATGTGCCATTGTCTCCCCCAGAATGTGACATGTACATCAGGGAAACCAGCAATGACTTAGAAGATGAAGATGAAGTATTCTTTGGGCCTATTGGCCATAAAGAGAGATGTGTAACTGTCAACAGTGATCTACAAGATGATGAAAATTTCAAACCAATGAGTCCACTTAATGGTGAACAGATCGCAGAACTCTTTAAAGAGGCAACTGCTGTTTCAATATTTCTTAAAAGCTCTTCAACTCATCAAAGCATTGATGATGACGAAAACAACATTTTTGACAAGGAAAATAATGGCATATGTAACATTTTATCACAGACATTCAATGTTACAGATAATTCACCAGATCTCGTGAAAGAAAGTGACTTAAAAATAACAAAATCAGTATCTTCACCCGAGTCAGTTTCAGAGGAGAATATTTCTGCACAGGGAGAAAATTCAGATGTGATTATTCCTACAACCCCAAAACGTGTTCTGAAGGAAAAAAATTCTGAGGACCAAACCATCACGATGCAATTTCCATCACCTTTCATAGGAAGGAAAGCTCGTCCACGGCAAAATGCCTCCAAGTATGCAAATTCCAAACTTCCCAAGACTGACATGACGCTGAAAACACGTAGCTGTTTTAATTCTCCTATAAAAGTTGAACATGCTTATGGAGTCTTAAAGACATTGAAACCAGCTGAGGAAAAGGCTAAGGGCAATGATAACACAACATCCTCTGTAAAGCCACGAGGAACAAGGATTAACAATACACAAAACTCAGGCAAAGGGGATTCATCATTTACAGAGTCATCATCCAAGTTACCTGTACCTTCACAAAGTGGAATAAGACCTCCAGGGTTTGGTGTCCAGCCACGTCGTCGTCGAACCAGCTCTACATCATCATCCTCAACTTCAAGTGCTGTGGCTGATTTGAATGACACATTCACAGTCTCCAAGGGACTACCTACAGATATCTCTGCTCTTCCTAGTGTCTGTCCACGTAAGGTGCCAGCTACAAAAGCTTGTTTAAAGCCTGTCAGTGGAACCAGTGGAGTACCAAAAACTAAATTTACTAAGCCTCAAGGGAGACCACAGCCTGTCAAGGCACTCCCTCAGCCAGGGACAAGTAACAAGAAAGCTCCACCAACTCCAAAGTCCCTGGGTAGTACTCCGGGGCGTTCAAAGAGCAGCCTAACCTCAAACCAGCAGCTTGATCGATCCCAGACTCCCAGTAGTGTGAAGAGGTCAAAGTCCTTCACGACACCGAATGCAGCTGGGACTAAAAGCACTATATCCACAGGGCAGTCAGTCAAGGGATCACAGACGCCATCTAAAAGGAAATCGGAAATCATAGTTACACCCAGGACAAGAGGTAGCACCACAGCAACACCAAGAAATAGCCAGCCCCCAGTTCCAACACCTGTAAAAAGGCGTGGTACTGCTGTAGAGGCTGGTGTCTCTAAGGTTCAGACAAAAGCAAAAGACCACAGGCCGTCCACTCCAGCAAACAGTTATGTTTCAAGCAGCACAGAAACCCCACCAAATCCAGTTCCTTGTAAAGTCACTAAGAGAACATCACGAAGTGCAAATGCTCAGAAACGACGTTCTTTCCTCCCCACCCCTCTGAGGAGTGAGAGAATTACCAGGTCTCAGTCACTAAGGTCTAGACCAGGCAGCAGTAACACAGATAATGCTCCACTCCCATTCAATATCTCACCATCTGCTGAGCTTGTTAAACCAAGGAGACCAGCAGTACAAGCTCCTGCCGATCACAATCTTGAGTCACTTCGATCAAACTCCAGACTGTCAGATCCATTTTCTCCAGCTTCTCAGATGACCATTGTGGATCCAGTCCAAGACTCTACTGGTCCTATTGGTGGTGATGCAGTGGTCAGAAATTTGATTGAATGGTCACCTGCCTTGCCGAAGGAAGGAACTCTGATAGACATATGA

Transcript

rna-g20442.t1

ATGGCGACAACAAGTTGCGAAGCGTTTTCCTGTAGGATTGATGGCGTTTTCGACCTGATAGAAGAtgaaaaattcgattttgaTGTGCCATTGTCTCCCCCAGAATGTGACATGTACATCAGGGAAACCAGCAATGACttagaagatgaagatgaagtaTTCTTTGGGCCTATTGGCCATAAAGAGAGATGTGTAACTGTCAACAGTGATCTACAAGAtgatgaaaatttcaaaccaatGAGTCCACTTAATGGTGAACAGATCGCAGAACTCTTTAAAGAGGCAACTGCTGTTTCAATATTTCTTAAAAGCTCTTCAACTCATCAAAGCATTGATGATGAcgaaaacaacatttttgacAAGGAAAATAATGGCATATGTAACATTTTATCACAGACATTCAATGTTACAGATAATTCACCAGATCTCGTGAAAGAAAGTgacttaaaaataacaaaatcagTATCTTCACCCGAGTCAGTTTCAGAGGAGAATATTTCTGCACAGGGAGAAAATTCAGATGTGATTATTCCTACAACCCCAAAACGTgttctgaaggaaaaaaattctgagGACCAAACCATCACGATGCAATTTCCATCACCTTTCATAGGAAGGAAAGCTCGTCCACGGCAAAATGCCTCCAAGTATGCAAATTCCAAACTTCCCAAGACTGACATGACGCTGAAAACACGTAGCTGTTTTAATTCTCCTATAAAAGTTGAACATGCTTATGGAGTCTTAAAGACATTGAAACCAGCTGAGGAAAAGGCTAAGGGCAATGATAACACAACATCCTCTGTAAAGCCACGAGGAACAAGGATTAACAATACACAAAACTCAGGCAAAGGGGATTCATCATTTACAGAGTCATCATCCAAGTTACCTGTACCTTCACAAAGTGGAATAAGACCTCCAGGGTTTGGTGTCCAGCCACGTCGTCGTCGAACCAGCTCTACATCATCATCCTCAACTTCAAGTGCTGTGGCTGATTTGAATGACACATTCACAGTCTCCAAGGGACTACCTACAGATATCTCTGCTCTTCCTAGTGTCTGTCCACGTAAGGTGCCAGCTACAAAAGCTTGTTTAAAGCCTGTCAGTGGAACCAGTGGAGTACCAAAAACTAAATTTACTAAGCCTCAAGGGAGACCACAGCCTGTCAAGGCACTCCCTCAGCCAGGGACAAGTAACAAGAAAGCTCCACCAACTCCAAAGTCCCTGGGTAGTACTCCGGGGCGTTCAAAGAGCAGCCTAACCTCAAACCAGCAGCTTGATCGATCCCAGACTCCCAGTAGTGTGAAGAGGTCAAAGTCCTTCACGACACCGAATGCAGCTGGGACTAAAAGCACTATATCCACAGGGCAGTCAGTCAAGGGATCACAGACGCCATCTAAAAGGAAATCGGAAATCATAGTTACACCCAGGACAAGAGGTAGCACCACAGCAACACCAAGAAATAGCCAGCCCCCAGTTCCAACACCTGTAAAAAGGCGTGGTACTGCTGTAGAGGCTGGTGTCTCTAAGGTTCAGACAAAAGCAAAAGACCACAGGCCGTCCACTCCAGCAAACAGTTATGTTTCAAGCAGCACAGAAACCCCACCAAATCCAGTTCCTTGTAAAGTCACTAAGAGAACATCACGAAGTGCAAATGCTCAGAAACGACGTTCTTTCCTCCCCACCCCTCTGAGGAGTGAGAGAATTACCAGGTCTCAGTCACTAAGGTCTAGACCAGGCAGCAGTAACACAGATAATGCTCCACTCCCATTCAATATCTCACCATCTGCTGAGCTTGTTAAACCAAGGAGACCAGCAGTACAAGCTCCTGCCGATCACAATCTTGAGTCACTTCGATCAAACTCCAGACTGTCAGATCCATTTTCTCCAGCTTCTCAGATGACCATTGTGGATCCAGTCCAAGACTCTACTGGTCCTATTGGTGGTGATGCAGTGGTCAGAAATTTGATTGAATGGTCACCTGCCTTGCCGAAGGAAGGAACTCTGATAGACATATGA

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009200 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15259 all species →	GTSE1_N	G-2 and S-phase expressed 1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026657 all species →	Family	Proline/serine-rich coiled-coil protein 1/G2 and S phase-expressed protein 1	Interproscan
IPR032768 all species →	Domain	G2 and S phase-expressed protein 1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21584 all species →	DIFFERENTIAL DISPLAY AND ACTIVATED BY P53 DDA3 /G2 S PHASE EXPRESSED 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0015630 all species →	Cellular Component	microtubule cytoskeleton	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10129	GTSE1, B99; G-2 and S-phase expressed protein 1	-	p53 signaling pathway	ko04115	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.