Gene detail

Detailed information of KAM7429743.1 in Porites harrisoni

Genomic Location: Scaffold0553:211589...225879
NR annotation: no NCBI-NR hit recorded
Species Porites harrisoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-g19944.t1

ACTCAAAATACGCTTGCATCGTGGAAGTCGAGTTTCAGGAACGTTTTTCCGAGATGACGTCTTACGAAGACGAGGAAAACTTTGGAAGCTACAGTGTTGTAGGATCATTTCCCAAAGATTTTGGATATGGACCAGAAGATCAGGATGATATCGCACACAGTGACAGCAAACCACGCATTTTATTGCTGGGTCTCAGAAGGAGTGGCAAATCTTCTATTCAGAAGGTTGTATTTCACAAGATGTCTCCAAATGAAACTCTTTTCTTGGAGAGTACCAACAAAATAGTAAAAGATGATATTTCAAATAGCTCATTTGTACAGTTTCAAATATGGGACTTTCCTGGACAAATAGATTTCTTTGACCCAGCGTTTGATTCAGAAGTGCTGTTTGGTCACTGTGGAGCTCTTGTCTTTGTCATAGACGCTCAGGATGATTACATGGAAGCCCTAGGAAAACTTCACATGACTGTTACAAGAGCATACAAAgtCAACCCAAACATAAAGTTTGAAGTTTTCATCCACAAAGTGGATGGTCTGTCAGATGATCATAAAATTGAAACACAACGTGATATTCACCAAAGAGCAACGGATGATTTAACAGATGCTGGACTTGAAGGTCTCCACCTAAGtttctacTTGACAAGTATATACGATCATTCTATATTTGAGGCCTTTAGTAAAGTGGTGCAGAAACTAGTACCCCAGCTTCCAACCCTGGAGAACTTATTAAATATTCTTATAACTAATTCTGGTATTGAGAAGGCCTTTCTATTTGATGTTGTCAGCAAAATCTATGTGGCCACAGATAGttCTCCAGTAGACATGCAGTCATATGAGCTCTGCTGTGATATGATTGATGTAGTTATTGACATTTCCTGTATTTATGGGTTAAGAGACGAAGGAGACAGTAGTGCTTATGATATGGAGTCCTCATCAATCATTAAACTTAATAACTCCACTATCCTGTACCTCCGTGAAGTTAATAAgtTTCTTGCCCTCGTTTGCATTTTACGGGATGTCAACTTTGAGAAGAAAGGTTTGATAGACTACAATTTCTATTGCTTCCGTCAAGCCATAAGTGAGGTTTTTGAAGTCAAACGTCAGATGAGATCTGTCTCAGATGTTGGATCCCACTCCGCCTCAGCCGCCTACTCAAACGGCAGTGCCGTGCCGGGCCTGGATCGAGAACGAAACGAGAACGCTGTAGTGGTGTAGCGCATGCGCGAATGTTCTTGATTTGTAACAAATTAAACTTGCCACTTCGATTCATACCGCATTGCTAATGCGAAGAATGTACTGAAATCCGCATCATTTGATGGACAAGTTTGCCGTTAGGTATAATGCCATGTATACTGTTCGTGCGGCCGACGCAGACGCCTGGTCATTAGGAACGAGGACAGCGTCGACGGCGAAAACGTCGCTTTATAAGTCAATTCGCTGCCCTCAATCTTCATCTagattattccaactcacttactctgtcaaatgtaggcgaactctcctCGGTCAGGTTGCATAAAACatcttaaagggaacctccacttcaacaaaaagataactttaaatcacaggaaataactgttacagtcaagtcaatctaaaatatttttaaagaaagcgtttgtatccgaaagaaataacttttagattcgcctatttttgttttcaaattttgcgggcgtcgccatcttgaataattgtgacgtgtaatggttgccctattgttattaaacaaaagctctttgtgtcagaacaatagagcaaccgtaacacgtcacaattattcaagatggcggcgcccgcggaatttgaaagtgaaaataagcgattttaaaattcacttttcctgatataaacacttttttttaagacaaatttcgaacaaatttgtttatcaacataattttattcgatttaaacttattctgtagtaagagtggaggttccctttaagatTAAGACAACTcgtaactattatttcaaaacaataggttattgTTTCAGAACAAAAGTTAAGAGCCCTCTTGTCTTAAGAAGGCTTTATGCAACCTGGCCCTGGAGTCGAATCCTTAAGATCCATATCCAAGTTTAGAAAGAGGAGGAAAAtatcgtcgtcgcttgtttacgtcctccacaaaCGTCATGAAAAttattaggcactttcacgtcgtagtcttgCAGTAACAGGAAAGATATGTACCAAGAACTGTGATGCACctgtaaagtttttgttttgctgctCAAAGCTATTGCTTTTTGTGACCTTATagttgttgtcgtcgtcgtcggaTCTTCGTTGTAAAATCGGGCTAAGCGTCTGACAGAGGAATGTTACTACATTTTTCATACAAAGTTTCAAACTAGCGAAACAAGAGGAGCACTATTTAATAATATTCCAAAGATTAATTCATTGCAATTTACTTATTCAAGGTGGATTCAGAGACCTCCAGGTTTTCTTTACTTTCCctacgtattttttttttttttttgggggggggggggggggctgggggagggggaaggggacATTAATGCAGACCAGGTTTAATGGGAGCATTGTGGAAAATACTAATTTTTGCCCGGCGGGTCTCGGCATGTTTGATATAAAACTGAACATCCACCACTGTTATCAATCAATCAGCGTTTTCAATTTAGTAAAGAAccaaacaaaggaaagttagtAAAAGCTTAATGTCGCAAAAATTGGTTTTTGCAGGAGTCCATAGTACGGAGTGAGCAACTTTAACACTGCGTTATCACAgaccggtttatttttagatacatCTTCGTAATATTTCTGGCGAAAATGGAAGCTCCGCTCCGTTTATGGGTGCATTAGAAGTATAAGATATGACGAAAGAAAATTGAAcgacattaaaagggaaaaaacagcaTTTTCAGGACTTAaagttttgctgactggttatATATTGGGTTTTAAAGATGTCCCTGAATTCCGCtaaatttctaaaaataaactggtgggtgaaaacgccgtgacacaaGTACGCGGAAGTTGTTCTCCACGGTTTTTCGCCTGTGAATGGATATGATGCCGATAGTGGCCCCGTCTTGCTAagttaggcccagttcagaagccggacttttcatgagccgaacctagtACATTGCATTAAGTACATGAATAggtcggcgtctgaatcaattatgaacgcctgtttcaatttggaatgGGTCAGCCGTTCTTCCCGCCTAGCCCGGCGGGAAtttcgactttggaacggcATTGATTCAAACGCCGAttcttttcatgtgccgaacctattgcataaattattataatgttttttgcaagcagtttgaccgaaatgagaatttttcaccttttgaatttagttcagctggaattaagatcggcgtttGAGTCAGTTCaaccggtctaaataatttgggtcggccttaattcgaattaggttcggctcatgaaaagctCGGtgtttgaaccgggccttactTCACTATTTCCCaagaaaatatgtttaaaaaagtGCCTTTGTTAAAGAATAGGTAGGTAGGTTAAAATGGGGTGGCCATGGGATGAAACTTGAGAGAAGTGGAACCGACATTTTAATTGACTTTGGTAAATGGGAAACATCGCTCAAATCCGTTACGGGAGGGTTTCTGTTACCTTCGAGTCTTGTCTACTTAATCATCGGACCATTCACAAGCGAGTGTAGCTGTTGTAGATTGAACCCGTTCTCAGTATCGTAActctactgtttttttttttgtttttacgcAAAAACTTTGGAAAATTCTTGTTATGCTGCCCCTTGATAACGAATCACAAAACATGTTGTCGCCCGCTGCAAGGGCGGGAAAACCGCCTAACGAGCAAGTTCCGATATTTGGTtgatttctgattggtcgaatcgTAACTTTCGTAAGGCCATTCTGAGCACAGTGAGGCGTAAGCAAGCATTCGTGATATTACTTTGATCACTTAAGTGAGAAGTGTTCTTTTTCATGAACTGTACCAAAGTATTttgatgaaagaaaaataaaatgttttcgaTGTTCAAATG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04670 all species →	Gtr1_RagA	Gtr1/RagA G protein conserved region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006762 all species →	Family	Gtr1/RagA G protein	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR039400 all species →	Family	RagC/D	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11259 all species →	RAS-RELATED GTP BINDING RAG/GTR YEAST	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005764 all species →	Cellular Component	lysosome	Interproscan
GO:0009267 all species →	Biological Process	cellular response to starvation	Interproscan
GO:0010507 all species →	Biological Process	negative regulation of autophagy	Interproscan
GO:1990131 all species →	Cellular Component	Gtr1-Gtr2 GTPase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16186	RRAGC_D; Ras-related GTP-binding protein C/D	-	Shigellosis	ko05131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.