Gene detail

Detailed information of KAM7433488.1 in Porites harrisoni

Genomic Location: Scaffold0333:47944...59287
NR annotation: no NCBI-NR hit recorded
Species Porites harrisoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ABFA07_016263

ATGGATTCTGACGCAACATCGAAGCAACCGTCGGGAGCGAGTGAGAAATCCTCTTTGCGCTTCGACGTTAACCAAGTGCATTTAGATCCAAATGAAGCTGACGAAAAGGAAGATCACAGTCCTAGGATGGATTTCCCTGAGCCCGAATCGCCAGATCGTCCTCTCTCTGTTCACGATGCCACGTCGACCATCGGTTATGCGACACATGATGCAGTTCCCATGACAGTATTCTACAGAAATGAGAATTCCAACTCGAATACGACGAAAAAATCGCGACCGACACTTCGCGAGTTGAGGAAAGGATTCGAAGAAGACCATGAGCAACAGCCCCTGGAAGTACCCAATGATGTAGAGAATATTGAAAATGGTGGCATCGGCAGTGATGAAATTGTCATCCAGCCCAAGAAGGATAAGAAAGCCAAGGTTGCCCCCAAATTTGGTTGGATTAAGGGTGTCATGCTGCGATGTCTTCTTAACATCTGGGGAGTCATGTTGTACTTGCGTCTAACGTGGGTTGGAGGGCAAGCAGGAATCGGCTGGTCAACAGTTATCATTATTCTTTCTGCAGTTGTAACATGGTTAACAACTTTGTCAATGTCAGCTGTTTGTACAAATGGTGAAGTTAAAGGAGGTGGTGCATATTATTTGATATCAAGAAGTCTTGGTCCTGAGTTTGGCGGTTCCATTGGTTTAATCTTCTCCGTGGCCAACGCTGTAGCTGTTGCATTGTACGTTGTTGGATTTGCCGAAACTGTCAAAGATCTGATTAAAGAACATGGCGGCGGTGTTGAAGTGATTGGCGAACTAAATATCATCCGCATTGTCGGTATTGGTACTGTGATACTCTTGCTCTGTGTCACCTTAGTTGGCTTAGAGTGGGTTGTACGCACACAGATGTTTCTTCTTTGCATACTTTTGGTCTCTATTGTCGATGTTATGATTGGTACCTTCTTAGGACCACTGAATGAGAAAAGTGAAGCAAGAGGCTTTGTCGGGTTGAGTCTCAATCTTTTCAAGGAGAACTTTGGGCCAGCGTACCGAGAGGGTGAAAATTTTTTCTCTGTATTTGCAGTCTTCTTTCCAGCTGCAACTGGTATCTTGGCTGGGGTGAACATCTCTGGTGATCTGAAGGATGCGCAGAAGGGAATTCCCAAGGGAACCCTGTGGGCCATAATCATCAGTACAATTGTGTATGTTGCTCTTGATTGGTTGGCTTTAGCCTGCGTGTTGCGAGATGCATCAGGTATAATTGTGCTTGCTAATCAGACTATAGCAAACGTTACCAGTACCCCAGCACAACACTGCTCAGTAGACTTCAGCTGTGAATATGGACTAATGAATGATTACCAGGTTATGGAGAAAATCGCAGCTTGGGGACCAATCGTTACAGGGGGAATCTTTGCTGCAACATTGTCCTCTGCCTTGGCTAGTTTAGTTGGTGCACCAAAAACATTTCAGGCACTTTGTAAGGATAATATCTTTCCTGGAATGCATTATTTTGGTGTTGGGGTTGGCCCAGGTGATGAACCTCGTAGAGGGTACATCCTGACCTTTTTAATCGCTGGTGCCTTTATAGCTATTGGAGAGCTGAATGTCATTGCTCCAGTCATTTCAAATTTCTTTCTCATGTCTTATGCGCTCATTAACTATGCGGTGTTTGCGGCCTCTCTTGGGAAGTCCCCTGGATGGCGGCCCTCATTCAAGTGGTACAACATGTGGGTGTCCCTGGTTGGGGCCTTGGTTTGTGTTGTCATCATGTTCCTTATCAATTGGTGGGCCGCTCTGGTGACAATTGTCATCATCATTGCATTGTACAAGTACGTGGACTACAAGAAACCCGAGGTTAACTGGGGCTCTTCTGCGCAAGCCTACACGTACATCCGCGCCCTTCGTTTTACGTATCGTCTCAATGACGTGGAAGATCACGTGAAGAACTTCCGTCCCCAGTGCCTCGTGCTTACGGGGAGTCCCTCGTCTCGTCCCGACCTCGTTCATTTGGTATCGCAGATAACCCGTAACACGGGCTTAATGGTCTGTGGTCAGGTCAAGATTGGCCCCTTTGGCATCGTCTCAGGTTATGAGGATCTCTGGCTAAAACAGCGCAAAATCAGAGCATTCCATACGATTTGCTCAGCGCCCAGTTTCCGAGAAGGTGTACGCATCATGCTGCAGACGGTAGGCCTGGGAAAGTTGAAACCCAACACGCTTGTGCTGGGATTCAAGCGAGACTGGAAGATGCTGTGGAAGAACCCTTCGGGAAGAGGCGTCGTGGAGGAGTATGTGAATGTGGTCCATGACGCTTTTGAGTTGGACTACGGTGTGGCAATTTTGCGTTTGAGAGGTGAGCTTGATTTGCAAGAGCTTTCAAAGTACCAAGTTGAAGACTGGCTGGCTATGGCGGACGATGACGAAGCGCCGATAGAACACATTATGTCAGGCACGAACTTCAACGAGAGGACGGAAGACACCGAGTTTGGTCCGAGCCATGAAGAAGAGTACCAGTTGGATGCTCTTAAAGAAAAGACCACGGAGTTAAACAACGGGGAGAATTTAGGCAGCAGCGAAACAGAGAACTTGGTTGACGCGCAAGAGAAGACCGAAGTCAGTTCAACTAAAGACGAACAACAAAGTCCACAAGTTGTGAAGAAAGGAAAATTTAAAGTCACTGTCAGTAAAATGCCAGGTGAAGATGAAGGATCCGAAGGAAAAGTCGATGAGACGACCAAGCTAACGGACCCTGTGGAGCCGCAAAAACCCCCGAGTGAAACTGAAATTGCTTTTAAAGAAAAACAAAAAGGAACCATTGATGTGTGGTGGTTCAGAGACGATGGAGGCTTGACAATCCTTATTCCTTACTTGCTGTCCATTCACAGTTACTGGAAAGATTGCAAACTGAGGATTTTCACGCCAGCGTCGACCCACAAACTGCAAAGCAACGAACTAAGAATGGCGAACCTGCTGAAGAGATTCCGCATTGATTTCTCAAGCATTGTTGAGGTGGAGGGAATCAACAAAGCCCCCTCTAGCCAGAGCATCCAAACCTTCATGAAACTGCCCATAAAAGACGAATTCACAGACTTGAGCACTCTGGAGAAGGACCGTAGGACCATGCGTAATATTCGCCTTGGCGAGCTCATCCGGGAACATTCAAACGATGCTAAGTTGATTGTCCTTACTCTTCCCGTCCCCAAGGTGGAGATGATGTCACCGTTGCTGTACATGAGCTGGCTGGAAGTGTTGTCAGCGGCTTCCCCTCCAGTGCTGATGGTCCGTGGAAATCAGCAAAGTGTATTAACCTTTTACAGTTAG

Transcript

rna-g16678.t1

TAATTAACTGCAAACAACCAATCAAAGACGTAAAAGCCATTCGTGACCATGTAAGCCTGGCCCTCAAAGACGGCACTTAACGAGTATCAGCAATGTAACCGTGGTCAACCTTATTTTATCATAACTTGGCAACGCTAGTCGAGCGGCACACTGCTCGTACGCCGCTTACGTCAGCAGCGTCGTAATGGACCATCAGGACTAACAGCGCCGGTGTAAGCAAAGACCAGCGAAGGTAGTTGGCCGACTGGTGAAAGGCGCAGAGTTAAGAAAGAGGGCTGAAGGGTTTGAAAATCCAATGGATTCTGACGCAACATCGAAGCAACCGTCGGGAGCGAGTGAGAAATCCTCTTTGCGCTTCGACGTTAACCAAGTGCATTTAGATCCAAATGAAGCTGACGAAAAGGAAGATCACAGTCCTAGGATGGATTTCCCTGAGCCCGAATCGCCAGATCGTCCTCTCTCTGTTCACGATGCCACGTCGACCATCGGTTATGCGACACATGATGCAGTTCCCATGACAGTATTCTACAGAAATGAGAATTCCAACTCGAATACGACGAAAAAATCGCGACCGACACTTCGCGAGTTGAGGAAAGGATTCGAAGAAGACCATGAGCAACAGCCCCTGGAAGTACCCAATGATGTAGAGAATATTGAAAATGGTGGCATCGGCAGTGATGAAATTGTCATCCAGCCCAAGAAGGATAAGAAAGCCAAGGTTGCCCCCAAATTTGGTTGGATTAAGGGTGTCATGCTGCGATGTCTTCTTAACATCTGGGGAGTCATGTTGTACTTGCGTCTAACGTGGGTTGGAGGGCAAGCAGGAATCGGCTGGTCAACAGTTATCATTATTCTTTCTGCAGTTGTAACATGGTTAACAACTTTGTCAATGTCAGCTGTTTGTACAAATGGTGAAGTTAAAGGAGGTGGTGCATATTATTTGATATCAAGAAGTCTTGGTCCTGAGTTTGGCGGTTCCATTGGTTTAATCTTCTCCGTGGCCAACGCTGTAGCTGTTGCATTGTACGTTGTTGGATTTGCCGAAACTGTCAAAGATCTGATTAAAGAACATGGCGGCGGTGTTGAAGTGATTGGCGAACTAAATATCATCCGCATTGTCGGTATTGGTACTGTGATACTCTTGCTCTGTGTCACCTTAGTTGGCTTAGAGTGGGTTGTACGCACACAGATGTTTCTTCTTTGCATACTTTTGGTCTCTATTGTCGATGTTATGATTGGTACCTTCTTAGGACCACTGAATGAGAAAAGTGAAGCAAGAGGCTTTGTCGGGTTGAGTCTCAATCTTTTCAAGGAGAACTTTGGGCCAGCGTACCGAGAGGGTGAAAATTTTTTCTCTGTATTTGCAGTCTTCTTTCCAGCTGCAACTGGTATCTTGGCTGGGGTGAACATCTCTGGTGATCTGAAGGATGCGCAGAAGGGAATTCCCAAGGGAACCCTGTGGGCCATAATCATCAGTACAATTGTGTATGTTGCTCTTGATTGGTTGGCTTTAGCCTGCGTGTTGCGAGATGCATCAGGTATAATTGTGCTTGCTAATCAGACTATAGCAAACGTTACCAGTACCCCAGCACAACACTGCTCAGTAGACTTCAGCTGTGAATATGGACTAATGAATGATTACCAGGTTATGGAGAAAATCGCAGCTTGGGGACCAATCGTTACAGGGGGAATCTTTGCTGCAACATTGTCCTCTGCCTTGGCTAGTTTAGTTGGTGCACCAAAAACATTTCAGGCACTTTGTAAGGATAATATCTTTCCTGGAATGCATTATTTTGGTGTTGGGGTTGGCCCAGGTGATGAACCTCGTAGAGGGTACATCCTGACCTTTTTAATCGCTGGTGCCTTTATAGCTATTGGAGAGCTGAATGTCATTGCTCCagtcatttcaaatttctttctcATGTCTTATGCGCTCATTAACTATGCGGTGTTTGCGGCCTCTCTTGGGAAGTCCCCTGGATGGCGGCCCTCATTCAAGTGGTACAACATGTGGGTGTCCCTGGTTGGGGCCTTGGTTTGTGTTGTCATCATGTTCCTTATCAATTGGTGGGCCGCTCTGGTGACaattgtcatcatcattgcATTGTACAAGTACGTGGACTACAAGAAACCCGAGGTTAACTGGGGCTCTTCTGCGCAAGCCTACACGTACATCCGCGCCCTTCGTTTTACGTATCGTCTCAATGACGTGGAAGATCACGTGAAGAACTTCCGTCCCCAGTGCCTCGTGCTTACGGGGAGTCCCTCGTCTCGTCCCGACCTCGTTCATTTGGTATCGCAGATAACCCGTAACACGGGCTTAATGGTCTGTGGTCAGGTCAAGATTGGCCCCTTTGGCATCGTCTCAGGTTATGAGGATCTCTGGCTAAAACAGCGCAAAATCAGAGCATTCCATACGATTTGCTCAGCGCCCAGTTTCCGAGAAGGTGTACGCATCATGCTGcagacggtaggcctgggaaaGTTGAAACCCAACACGCTTGTGCTGGGATTCAAGCGAGACTGGAAGATGCTGTGGAAGAACCCTTCGGGAAGAGGCGTCGTGGAGGAGTATGTGAATGTGGTCCATGACGCTTTTGAGTTGGACTACGGTGTGGCAATTTTGCGTTTGAGAGGTGAGCTTGATTTGCAAGAGCTTTCAAAGTACCAAGTTGAAGACTGGCTGGCTATGGCGGACGATGACGAAGCGCCGATAGAACACATTATGTCAGGCACGAACTTCAACGAGAGGACGGAAGACACCGAGTTTGGTCCGAGCCATGAAGAAGAGTACCAGTTGGATGCTCTTAAAGAAAAGACCACGGAGTTAAACAACGGGGAGAATTTAGGCAGCAGCGAAACAGAGAACTTGGTTGACGCGCAAGAGAAGACCGAAGTCAGTTCAACTAAAGACGAACAACAAAGTCCACAAGTTgtgaagaaaggaaaatttaaagTCACTGTCAGTAAAATGCCAGGTGAAGATGAAGGATCCGAAGGAAAAGTCGATGAGACGACCAAGCTAACGGACCCTGTGGAGCCGCAAAAACCCCCGAGTGAAACtgaaattgcttttaaagaaaaacaaaaaggaaccatTGATGTGTGGTGGTTCAGAGACGATGGAGGCTTGACAATCCTTATTCCTTACTTGCTGTCCATTCACAGTTACTGGAAAGATTGCAAACTGAGGATTTTCACGCCAGCGTCGACCCACAAACTGCAAAGCAACGAACTAAGAATGGCGAACCTGCTGAAGAGATTCCGCATTGATTTCTCAAGCATTGTTGAGGTGGAGGGAATCAACAAAGCCCCCTCTAGCCAGAGCATCCAAACCTTCATGAAACTGCCCATAAAAGACGAATTCACAGACTTGAGCACTCTGGAGAAGGACCGTAGGACCATGCGTAATATTCGCCTTGGCGAGCTCATCCGGGAACATTCAAACGATGCTAAGTTGATTGTCCTTACTCTTCCCGTCCCCAAGGTGGAGATGATGTCACCGTTGCTGTACATGAGCTGGCTGGAAGTGTTGTCAGCGGCTTCCCCTCCAGTGCTGATGGTCCGTGGAAATCAGCAAAGTGTATTAACCTTTTACAGTTAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08403 all species →	AA_permease_N	Amino acid permease N-terminal	Family	Interproscan
PF03522 all species →	SLC12	Solute carrier family 12	Family	Interproscan
PF00324 all species →	AA_permease	Amino acid permease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013612 all species →	Domain	Amino acid permease, N-terminal	Interproscan
IPR018491 all species →	Domain	SLC12A transporter, C-terminal	Interproscan
IPR002443 all species →	Family	Solute carrier family 12 member 1/2	Interproscan
IPR004842 all species →	Family	SLC12A transporter family	Interproscan
IPR004841 all species →	Domain	Amino acid permease/ SLC12A domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11827 all species →	SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0006884 all species →	Biological Process	cell volume homeostasis	Interproscan
GO:0008511 all species →	Molecular Function	sodium:potassium:chloride symporter activity	Interproscan
GO:0015377 all species →	Molecular Function	chloride:monoatomic cation symporter activity	Interproscan
GO:0015379 all species →	Molecular Function	potassium:chloride symporter activity	Interproscan
GO:0035725 all species →	Biological Process	sodium ion transmembrane transport	Interproscan
GO:0055064 all species →	Biological Process	chloride ion homeostasis	Interproscan
GO:0055075 all species →	Biological Process	potassium ion homeostasis	Interproscan
GO:0055078 all species →	Biological Process	sodium ion homeostasis	Interproscan
GO:1902476 all species →	Biological Process	chloride transmembrane transport	Interproscan
GO:1990573 all species →	Biological Process	potassium ion import across plasma membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10951	SLC12A2, NKCC1; solute carrier family 12 (sodium/potassium/chloride transporter), member 2	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.