Gene detail

Detailed information of KAM7434167.1 in Porites harrisoni

Genomic Location: Scaffold0308:305897...317676
NR annotation: no NCBI-NR hit recorded
Species abbreviation PHARR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-g16109.t1

AAACattccaaacaaaatggcgagGTGATCGTTTCTGTCGATGGGACGTTATTGCGTGTAGATGTCTTTGGTCAGATCCTTTTCTAACGAGGTCTGATCGCCACGAGGCTATGGCGGATCGTGGTAAAACACGGTCGAAAATTTACGAGAGGTTAAACAACCCTGAACTTCGCTGTAAAACCGGTTGTGGTTTCTATGGCAACCCGGCATGGAAAGGTTACTGTTCAGTATGTTATCGTGAAGtgtatctaaaacagcaaagagCACGTGCTGCATCACAGAGCAGGGAAGCTGCCCTTGCAGGAGGCTCTCAAAACTTGCGTGCCGAagttgCACGAGAGGAGCCTGAAGAAACTGGAAAGCTAAAGTTTAATAAgtttgaagaaaagaagaaatttcaGTTGGAGTCAAAAAAGCAGAGTGTAAAGAACTTATTCAAAAAGAGTCCTGGTAGAAGCGTTTTACCAGATGGTTCCCCAGCTGCTAACTTTACTCCATCACCAGTGGAGGTTCCCAAGGCTGCTGGTGGTTTCCGTGAGTTTCTGAAGACCCTCAAGAAGCCGGCTGCTCAAGATGTTAATGACAAGTGCAAAGTATTTGTCCAAAGAATGTTAAACAATCCTACACTCAGTGTGGACCAGCAGAGTGAAATGGTGCATGATTTTTATGGGGCGATGTCTGAACATCTTCAATCCCACCCTCTGTTCCAAAACCAACCTCCAGAGGTCATTGATAGAACTTTGGATGGTGTAGAAAAGCATATCATGACCAAGCTCTACAGAGTTGTTTTCTGTCCACCCTCTACTGATGATGAAACAAGAGACTTGGCAAATCAAAAGAGAATTCGAAGTTTTAACTGGATATCTCCTCAACATCTTGATGCTGCTATTAATCCTGACAATGAGAAGGTTCAGCAGTTGATTGAAGATTCACAACAAGATCTTGTTGAGATAAACACTAAAAGAGCTCCTCAAGACAAGCTGGCTTGTGTTGTTCGATGTTGCAAGAAAATATTTAAAATTATTCATTTGTCAACACCAGTGGGGGGAGCAGTAAGCGCGGATGATTTTCTTCCTTGTCTTATTTATGTTGTGTTAAAAGCAAATCCTACAATGTTACATTCCAATGTACAATATATTTCCAGATTTTGTAATCCAAATAAATTAATGATGGGAGAAGCTGGGTATTACTTTACAAACCTGTGTTGTGCTGTATCATTTATTGAGAAGCTTGATGCTCAAGCATTATCCATAACTCAGGAAGAGTTTAACAGAAACATGTATGGCGATGAAACAGATAACTCAGAACATAGTAAAGCTAAAGCTGAACCACCAGTGACATGTAAAGGACTAGAACTTATGAAGTCCAATCTTGAAATGCTTGGAACACTACGAgaaagacaaataaaacttaGGGAGGATGCTCTTGTGCTACAAGAACAGATGACAGAATTTAGGAACAATGTTGTAAAAGAGGTTGATGCTATCTTAGCTGGTACAAGTAAAGGTAATATGTACTTTAAACCAACACTATCATCAACTGATCAACAACCTTCAACATCAGTTGTGGCAAGCTGACAAAGTGGATGAAAAtggacaaaagaaaaattgagcAAGTGAAGGTGAAGGGAGTTTTACTATAGGACACAGATTACGATAATCTAAAGATACAACACATGTGTGGATATCAACTGCTTGGATGCTTTTGGTACAGTAAGCTGATCATCAATATTGAAAGATGACATCAAAGGCAGGGAAACTCTGCTAGAAGACACTGGTAATTAAAGTGATAGTGCAAAAGCTGGGATAATTATTGTACAGAGTAATATTGCAGCTACAAGAAAGCCAAGTGAAGAACACTCAGGCAAACAAGTTTTGCTCCAATGTGATTATAGCAAACTTAAGCAATGCAGAAATCCAGTACTTAGCACCATGGGCAAATCTTGTAAGGGTAACGGGAGAAATTGAAGACAGCACTGAAAAAAGGAGATTACCGATCAATGTCAATCAGTATTTGCAAAGTATATATTTATTGTCCATACTGCTTTTAAAACAggttttctattaaaaaaatacagatGTGAAAATATGAAGTAATTTATATTCATGTTACTATTTTGATTGGGATGATAAAGTGATAGAATAtaagaaaacaatgtttttggTTCTTACCTGAACGGAGTCGGACCAGTTTTCTGAGAAATCTTGATCTGTTAAGAGTTTTCTCgcccttttttgtttttttgtcctTCTAAATAATTATTCATTACCTCCTAGCATTCCAGCACATTATAGGTAACTCTCTGACCGttaaggaatttttttttatgatttttgtaaGTGTTTTGTCAGTTTAGGGAGAGGCGGCTAACAGATGAGGGAAAGAAACTGCtcattaaaatatatattaaatata

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|ZnF\|ZnF_A20 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01754 all species →	zf-A20	A20-like zinc finger	Family	Interproscan
PF18151 all species →	DUF5601	Domain of unknown function (DUF5601)	Domain	Interproscan
PF02204 all species →	VPS9	Vacuolar sorting protein 9 (VPS9) domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002653 all species →	Domain	Zinc finger, A20-type	Interproscan
IPR003123 all species →	Domain	VPS9 domain	Interproscan
IPR045046 all species →	Family	Vacuolar protein sorting-associated protein 9-like	Interproscan
IPR041545 all species →	Domain	RABX5, catalytic core helical domain	Interproscan
IPR037191 all species →	Homologous_superfamily	VPS9 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23101 all species →	RAB GDP/GTP EXCHANGE FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030139 all species →	Cellular Component	endocytic vesicle	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20131	RABGEF1; Rab5 GDP/GTP exchange factor	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.