Gene detail

Detailed information of KAM7434871.1 in Porites harrisoni

Genomic Location: Scaffold0284:192187...197138
NR annotation: no NCBI-NR hit recorded
Species Porites harrisoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-g15476.t1

TGGCTGTTCACAGCGGGTTCTCTTTAATTTGGAACTAAAGCTTAGGACTCTAGAGCAAGTAGACATTCCTAGCTTTCCTCGGTTGCCTACATGCGCTTTACTCAGCCCAACTAACACATCCTTTGCTCATTCTCAAAGAGCTATCCCAATCAATGGAGCAAAACAGACGTGCGACTGCTCGGGGTATATCTTTCAGCGTGGAATCGCTTATATCAAAATCAGACCAAAATGGCGACAGCCAGGCAAATTCAGCACGCGCACCAGGGTTACCGATTAACTTTTCTGTTGAAAGACTGTTGGATAAACAAGAATTTAGGGGAGGAGAAGCTGCGAAGATTACTGAGCCATCCTTAAAACTtgtcaaagaaagcaaagatacaaATGAACGACTAGAGTGGACAGATGACTTTCCGTGGATGCATTCTACAAGATATGACCCTCCACCTCGCATTCGTCCCCGACTGAGCCCTACAAAATGCCAACTCCGGAAACACAAGACGAATCGAAAACCAAGAACACCGTTTACAACTTCGCAGCTACTTGCTTTGGAAAGGAAGTTTCGACAAAAGCAGTATCTTTCAATAGCTGAAAGAGCGGAGTTCTCGGCCTCACTGAGCTTGACGGAAACGCAAGTAAAAATCTGGTTTCAGAATCGTCGAGCAAAAGCAAAAAGACTTCATGAAGCCGAGCTAGAAAAACTAAAACTGGCCAGCAAGCCATATATGCCACAAAGATTTCCGTCGACCCTTGGCGGATCCGGCTCTGTATGTTGTGAACCGTCGCCTTATGGACCACACTTGGCTTTCCAGCCTTATAACTTACCTACTTCACCTTATGGTCAAGCCATGAGCTATTCTCAAAGGAGTCCTTATGTCGCCCATCAAGTTTTTCATAATTTCATGTACCATTAGCTCAGTCCGCTACCAGCAGAACAATTTAATGACAATTTACCACTCACCATTTGATAAAACCATGCACTTTATCATAAGTGctaaattttcaatttcagtaACATTGGTGAAATATAAAAAGGCGACTAAGAGTTTGAACGGAATGGATGTTAAAATAGCGAGAGTGATCCTTTACTGGatttttttctaaagaaaattcttaaatttgttaattttcGTCACATTATTGTCGGGGGTGGAGATAAATTACTAAGAAAGTACTGAGCCTTGTTTGAATACATATTGAAAAAGCATTTGTATCTGAATGAATTCAACTGATTTTGGTTGTGTGCTGATCAATTATAAAGATGTCAAGCACATTTCTCTGAAACAGTTTCATGATAATTTATGTGAGCCACAGATATGGCTTTCTACTGCAGCTCCTTCCTTTGTCACAAAAACAATGCTAGTAGTATTTATTATAATAAGTGGTGATTAGAATTCGCTTAACCACCATTCACTTTGTGCAGTTTGCCAAAGGAAGCCAGAATAGAAATTATCTCGCTATTTCTCTTATACAACAACTGGTTGTCAAATTCTTGTACCCGCTAAAACTCGTGAAAAGAACACATATGGGCTTCTTTATTTTTCTGCTGGTAGGGCTGTAAttatgtttttttccttttttgcgtCTGCACTGACGTTAGGTTTTGCCACCCTACTTATGCCTGTGTCTTCAAGACACTGGTGGCCATATTTTGCTCGAGGTTATTGCAACACTTCAAAACTTAGTGATTTTTATTTATCCAAGCCACCAGTGTTATTCACGAGTAACACTAGGTGTTACTGCTTCAagttaaaatgattttttttatcttaagaGCTATCACGGTCTGTGTAAATAAGGACAATGAGCAATAGAATATGTTAACTTAAAAACTGTGTTCCGATGCCTACTCGCTTTGTTCTATGTACGCGtgtctttttattaatttgccAACTGCGAAGAAGTAGTAACAACTTTTTAATTATCGTGAAGCAACTTGTCTTGGTATAGGTGAACATACCTAAACAGCTTTCGCCCATATGGTCCAAATTACGAAATACGATGTGAGGCTGCGACGCCGTTTGGCGATAAGAAAACCagatttttattatttgcttcTGACCAAAGCGGCTTAACAAACGGCAGCTAAAACTATCATCCCCTCTCGCATCTGGCCCGTGtatgttttgaattttgtgtATCTAATGGGCTTAAAATTCAGTCAAGGCTCCCAATGGTCTGAATGCACACCCAGTTTGCCTGTGCTGTGAGCACCTTCGCTTTGTACACTGTGTTTTCACACTTCTTGAGGAAGTTTTTGCAAAAGGTACAGCGTACTTCCTTTCCTTATGTTTAACATTTATTCGAATTTAATGGTCTTATCTTAGTGGAGATGATGTATTTTAAGTGACATGCATAGCTGTGATTCTTCTTTAACGAAAGATGTTTCTGCGCCTTACAAACGCTTTTTACTCCATTGTATTTCGGCACTTGGCAATTGATATTTAGAGAAGTATAATCTCTACCCTAATCCTCTTGGATTGAGGACAATAACCGTTTTCCTGGATCTGTTTTACATTTTGGGTTTTCTATTACCGCAGCCTCTAAGGCTCTGTCAGTTTCTTTCGCTGGCTTCTTTTCTGATTGTATTTTACTTATATTAACTAAATTAACTGCACTTTTACGACTGCGTTCTACTAGCTTTCTCTTATACCTCatattttttctgcaaaaaattgCGACCTATAGCCCCCTAAACTGAACCTTAAATCTAGAAGAAATTCATATTCACGATAAAATTGGATAATATATGTTGTGCGGCTATTATTTCAAGTGtacaaaattgcacaaaattgTGTAATAACTAATGGCAGCGATGGAATCAACGCTTTTATGCGCTTATAATTGGAGAAACAGCCTTAATCAGTTTACAGACTAGTTCTTATTTACATTTCGGTCAGCTGGAAATCGCTCGTGGCAAGTTTCTATCTCggtaataaaaaattaacatgtTTTCTGAGTTTCGGACATTCGGATTAACGTGTTTACATTTTTCTTCCCGGTTACCTTCTACTTtgtcaagtttgttttttgttcgaATCGAGACGAAAATCCGAATGGTTGGCAAATATTTTTGCGCACTTGAGAAGAACGTATCTTGTGTTTACTCAGCAAATGAATATGAAAACACTACTTATCTCGCCAAATTACATACCAATTAGTGCCCAGCGGGCCTCTTGAGAACGCCCGGTGTCTCTGTTTGTAAAGTGATTCATTAATAAGCAATTTTATAAAAGGCAAACTAATTAAAAAACGCTTTCGTCGGTGCGCTTTGTTTGTAGTTTTAGTCACACTTATAAAGGTCTGTAGAATCACTTCAAAATTCGAAGGCGGGCTCAAAGGTGGCGATACAAAAGGTTCAGTGTATACCTCTACAATAAGGAGTAGAAACAACAATGATAGTGACAACTACGTTTGTGTTAAACAGAAACTTACACTGCCATATTTTTAGCAGATACTTTGCCCAGTAGTGCAATTAGTTTCCACTCAATAAAAGTGGTATCAGTCAATTGTTTATGACAAACATCTCGACTCGAGAACCAGCCTCCTTCTTGAGTACCTCCTGCCGATGTCCAATCACCATCATTCTGACAAGTTTGGGTTTTTGCATACGAGGACGTTGAAGTTCTGTTGTTGAATTACAACAACTGTGATGTGTAAATTTTCACTTAGATTAAGCGGCTTTGCCGCAAACTCGTTAACCATAATAAACTTTTAGGGGCTGTCTTTTAAGGGTTTGATATTCCTTTGCACAATGGACCATTTGGTAGAGACACGATGCATAGCATGCTCCAGTAGCTCGCGGCAGCTTTTGAAATCACTACTAGAATTCCATATCTTCCTCTCAATCATGATATTGCACCTCGGCATTGTAAAGATATGACTTTCACTGAAGAGGAGCTAATTGTTTCGTGGGCGTTCTAATGAAGAAATTAAACGAAGGTCAACTCTCTATGTATAAATTATTGTCATGCAGATGATTTGTGAAGACTACAGACGATTAAAAATAGACATAAATTGTCTGCAATCCTCAAAGGGTTGGAAGCCCTGAGAGGAAAGAACTGGTtctctgttctttttttttcttttttttttttttttgctgggtTTTGTGGTGAACTTTGAATGGGATTTCCATGCCCCAATAgacttttaatttgttgttttatGGACCATTTGTCGAAAATTTCGCAGATGATCGACCTTATATTCCTTCTTGAGGACGGTATTGTACTGTTGTCCACATTAAATTCTGTGTTAGTTGTCGAAAGTTGTTATTTCTTAGTCTCTTTATCTCCTGTTCCCAATAATACCGATTTACCTATTTGTCATACATGTACTTTTTCAAGCACTCTTCTTTATTGCTGGAACAACGAAATTTGTTTGGCATTTACTGCTACGTTCTTTtaacaaaatttcgaaaaaaccacgtttattctttgttttttggttGATCGTTTAGTGTTTCTGGATCAGCTAAGAATGAGTTATTGTGAAATCCATAAACAAAGACCTATTGTCGAAAATGCCATATACTCAGCAGGATCGTTTCGGTAATCGTCACATACCAAGAAGAATCATGGACTTTATGTTGTCTTATCTCGAAGTTTCTGCGTTGTTAGCACAGCTAAGTTGCGAAAGGATCAGAAATACTTAATTATCACTAGTTGAATAGTCTAATTACTTATTCTTCTTAGCTCTTTTgactcttttgttttctgtttgttatGGTGTGTGCTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR000047 all species →	Conserved_site	Helix-turn-helix motif	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR020479 all species →	Domain	Homeobox domain, metazoa	Interproscan
IPR050674 all species →	Family	Msh Homeobox Transcriptional Regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24338 all species →	HOMEOBOX PROTEIN MSX	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0048598 all species →	Biological Process	embryonic morphogenesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09341	MSX; homeobox protein MSX	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.