Genomic Location: Scaffold0275:657469...678468
NR annotation: no NCBI-NR hit recorded
Species Porites harrisoni · all data for this species · gene families
| CDS |
| ABFA07_014862 |
| Transcript |
| rna-g15238.t1 |
| Protein |
| KAM7435199.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004463 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00145 all species → | DNA_methylase | C-5 cytosine-specific DNA methylase | Domain | Interproscan |
| PF21255 all species → | ADDz_Dnmt3b | DNMT3, ADD PHD zinc finger | Domain | Interproscan |
| PF00855 all species → | PWWP | PWWP domain | Domain | Interproscan |
| PF17980 all species → | ADD_DNMT3 | Cysteine rich ADD domain in DNMT3 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR029063 all species → | Homologous_superfamily | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Interproscan |
| IPR001525 all species → | Family | C-5 cytosine methyltransferase | Interproscan |
| IPR000313 all species → | Domain | PWWP domain | Interproscan |
| IPR049554 all species → | Domain | DNMT3, ADD domain, PHD zinc finger | Interproscan |
| IPR011011 all species → | Homologous_superfamily | Zinc finger, FYVE/PHD-type | Interproscan |
| IPR025766 all species → | Domain | ADD domain | Interproscan |
| IPR018117 all species → | Active_site | DNA methylase, C-5 cytosine-specific, active site | Interproscan |
| IPR040552 all species → | Domain | DNMT3, cysteine rich ADD domain, GATA1-like zinc finger | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23068 all species → | DNA CYTOSINE-5- -METHYLTRANSFERASE 3-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008168 all species → | Molecular Function | methyltransferase activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K17398 | DNMT3A; DNA (cytosine-5)-methyltransferase 3A | EC:2.1.1.37 | Chromosome and associated proteins | ko03036 | deepkoala |
Genes whose expression across the transcriptome samples of Porites harrisoni tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Porites harrisoni, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |