Gene detail

Detailed information of KAM7436540.1 in Porites harrisoni

Genomic Location: Scaffold0230:489685...498627
NR annotation: no NCBI-NR hit recorded
Species Porites harrisoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03850 all species →	Tfb4	Transcription factor Tfb4	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004600 all species →	Family	TFIIH subunit Tfb4/GTF2H3	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12831 all species →	TRANSCRIPTION INITIATION FACTOR IIH TFIIH , POLYPEPTIDE 3-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000439 all species →	Cellular Component	transcription factor TFIIH core complex	Interproscan
GO:0005675 all species →	Cellular Component	transcription factor TFIIH holo complex	Interproscan
GO:0006289 all species →	Biological Process	nucleotide-excision repair	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0070816 all species →	Biological Process	obsolete phosphorylation of RNA polymerase II C-terminal domain	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03143	TFIIH3, GTF2H3, TFB4; transcription initiation factor TFIIH subunit 3	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.