Gene detail

Detailed information of KAM7436859.1 in Porites harrisoni

Genomic Location: Scaffold0222:310...7239
NR annotation: no NCBI-NR hit recorded
Species Porites harrisoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-g13696.t1

AAAAAACAGTAAGTCAAAAGAAGGTAGAACATATAAGTTACGTTTTCTATTCAAAATGAGCACTTTTTATTTCACAAAAGTTCCACCAGAGGAGCAAATGTATGCAGATATCAAGTCACTCAACAAGTTCGAAGAAAACGCATTTTGTCAACTCCTGGACATTGTATTTTCGTTCCTCGTTTCGCCAAAGGAAGGGACTAGATTCATGTCTCAGGTTGCGGAGTTTGCGTCCGAACATGGAATAAGCTCTAACCCACTCAAAAATGTTGTCAAAAGTTTACTCAGCTTTTTCAAGAGTGCGCTGAAATGCAACTTGACCCCCGCACAAGTGAAAGAGGACGTGGAACATCTTGGTCTTTCAGCTGATAACTCCCCCCATGTCTCTGAAAGATGGAAATCAAACCTTATTGCCCTGTCAAGATCAGTTGTTGGTCAGACATTCATGGTCAATCAACTTGTTGATATGGAATGGAAATTTGGTGTAACAGCAGGAAGTAGCGACTTGAAAGTCGTGGGACAGACATTTTTGCAGCTAAAAATGGTTGTTGATCGAGGTGGTGTCCAGGAAGACGTGTTCATGGAATTAACCCTGCCACAGTTTTACTCATTTCTTCATGAGATGGAAAGAGCAAAGTCCACACTTGAATTTTTCAGTTgagataggtaggtaggtatTTGTTTGGTCGACTCTTGTAAAGACAGACACTTTTGAAATCTTAAGTACCAATATATGGCACCCTGTGTCCATTTTAGATAGGCTGTCTATCTTATTAGTGATTAACAATTACTGTTTatgtataaaagaaaaaagcctGATAATGAAAGGGATAAACTCTCCACAGCTCCTATAATGGGGCCTCTACAGGCTGTGCCTGGATCAACTAACCACAAAAAATCAACAGTCTTAAATGTGACCCAACACTGCATGGAATTTATTACTCACTACTTTTAATGTGCTTTTTATATACAAGCAGTTCATGTTTTATCAAGTCTTAAATGCTAAGAGGTTTAACGCTTGATTAAAAAAGAACCACTAGAAATAAATCTGAAAGGTGTTCTATATGCACACATTGTTCATGCTTtcataaaattattattttagaaCATGAATGGGCAAACTAGTAAATGTATGATATGCAAATGTTAAAAGTCTTGTTGACCGATCAAAGAGCCTGAATTTGTTTGATGGCCAAACCTATGAGAAAAATTAatcaaaaaataacaaagaattgGTAAGCCATATATTTCAACAGAATTGTATGCTTAAATCCCCCATTTCCATGACCAGCTCCTGCTTTTTACTTTAAATATGATGTTAAATCTCCTAAATATATACAACAAAGGGAGTGAGCTAAGTATCTAGATTGTATAATTTTTGGGTATTATACATTCCCAAGGAAACATCCATACAATGGTAGTATTTTTACCATATTTTCTAACTCCCACAGTGAGAAAAATAATCTCGAACACTGCCAATTTGATGTCAGTTAGGAGTTTCAATAATTCCCATTTCTGCCATTCAATGTTCATGAACTAGTATCATCTAAATACAGTTTATTATCCTTGCATTCCCAAGCTTTCTGTTCTTCCTCATGCAAATTAGCTCTTTTTCTCCTCTCCTGAGGTGGTAATGATTTTATCTCGGTCCTCATCATATCCAGCACTACTTTCCGCTCTTGTCCATGTCTTGCACTCAGTTTTATGTACTGACTGTTCATATTACTGTAGAATTCTGCCAGTAAAAGTCTCATCTCTTGGATCAGCTCCTCCTTTCTGGTTAGCATTAAACTAATTTCTTTATCCTCTACTTCtcaattgcaaaaaaaaatatcagttaGCAGTTTATTCAAGTAATCTGTACATATTAACACAAACATTTGACAGTCACTTTAACAGTTTGCAACTGCATTTTTCCTGAATTTGCACCTGCCAAGCTAGATGGCAGATAAACCTTTTTTCCCCAGAGAGAATGATAAAGACCACCAAGGGAGGTTTAACTTTTGACTCTATAGATGAAACCCTGTGGTGTTACCATGCAAAAGAAACCTCCTTggtagtactttcacatgagACCATGGAAATTTGGCACTTTTATTCAATTTTGACTTTCACCACTTCTGACCTTAATTACACACTACTTGCCCCCACCAGGGTTCGTAACTTAGTCGGTAAAACAACAGTAGATATAATCCACCAAAGTCATGGTTTGTTTGAATCCCACCAAGGTCAAACGATGTTCTTCAGCTCATGTTGTTCCCCAGTTCTCTCCACCAGGGCTAACTCTCAGTTGGTTTTATAAGCTATTTGTAGCACTTTAATTTTCTCCCTGGAGGTAACTGTTTGTTGACTCAGTTGTCAAGTAACGTGACTACCCAAATACTAGTCAAAGTGTGTATTacaacaaaatgaatgaatgttTTCACTGACAATTTAAAACCACAAACATTAACTGTTGATAAGTTACCTCTGTTCATTCTTCTTCTACAGAGCTCATAAACCACTCCACATAACACAGCAGCAGTCAATATGACTGATAAAACAATCACATTCACCTTGTAGACATCATCTGAACTATCAAAGAGCCCTGTTGCTTCTTGCTCAGCTCTAGAGGCCGTTGAAGGCTAAAATAGATCATGTAGAGCCGTTAAAGTCGTCTTTCAAATTTCCATGTACAGTGTAATATTCCAAAATCAAGTATTGAGTGTTTGTTCAGGTTTCTAGGCTCTCTTTCTACTGCTCCTTCGGGCCCGCTCTTGTTCCCCTGAGGGAAAGGAAAGCGTGGGCTCATTTCCCAAACCACAGCTGGTAAAGAAACCTGTAGGTTGTTCCCAAGTTGACCCAAGCCTCAGTTTGAAAGTGTGAAGCCACTGGTATGAAAATTATtctttattctcatgcaaaccCATTATAACAAGGACGTTTTTTCACTtagttttgaaagtgaggggtTTTGGAACTCACAAATGGCCCAATTAGGTTTTCCAGACACAAGAACACTGACAACAGGCTGACAACAGGCTACGTGCTTTTTATGCCAGTTTACTTATGTTAGTTATCGCATTCTATTGCTTTCCAAGTTTGAAGTTCTCCCTACCTGTAATGTTTCAGTATAATTGTCAATGAGACTTGTTAAAAAAGATCTTTCCTGCTTAAGATAATCCAGAAAACAGTGTTGGAGTCTTACAGAATTACCTCCGAGAACAATGCCAAAAGAAGATCGATAGTCTataagctgaaaaaaaaatgagaacaaTTACAACTTCTGCCTCTGGAATGCCTAGTAAAGAATGCATCAAACAGGGAAAAGTGATGGGTGAACTACATAATGAGGCACAAAATAGATAAAGTCTTGAACCTCTGTAAGTGACCAATATGTAGCCTGCAAGCAGGCTCACTTGTGCGAGTTCAAGGGAAAATTTTTGGCGGCAGAGCTGGGCCGTCCACTTTTCCTCGCTGGATGGCGGCTCCGCCGTCAAAATAATTTTCCCCGAATTCAGACAAGTGAGCCTGCCCACATGCTAACCAATATGCCAAGATTCAGTGGCTGCTTTTGGGAGGTGAGGTGATCACTTGGTTTAGTTGAACCACAGGGGTTTCTGCGGAAAAAAGGTCTGACACATTGACCTGTTAGAAGAAATTTATTGTATGCAATTTTTTAAATTACAATACAAGCAGTACTATGGTGTCAGGTATTTGCTTGCAAGAAGTTTAAAACATTAGACAAGTTGAAAACCGTGAGCCCAGAAAATGGTCTTGGATGCTTACAAGAGGTAATCGTTTAAGAAAGTTTCTAAACACAGGACTTGCATTTTGCATTAAAATTTTCTTGCATCTGATGTAAAAATTTCTTACTTTACAACTCCGTTGACATTCCATTTTGGTCGTAACAAGAGCTCTACAGTATGACTAGTGCTTGAGGACCATGTGGAGTCAAGAAATGGGTTAAGTTGAAGTTTATGTGAAATTAAATTTAGGCTAGGATAAAGATGGCGTGGTATAAAAGTTTGGAGTATTCATTGTTTACCTTATGAACTGCCAGTGATTCATGGTCAAAAATATCTTTTCTTGCTGCTGCTACATATGTGTCAACTAAGGCGCCTTTCACCACCCCTGACAGTAAATCGTCCCTTATATCTTCAAGTCGCGTGTAGTTGCGTactgaaaatgagaaaaataaatgtAGACATATAACTCTTGTGTACAAGGTGTAACAGTTGttatgtactgtttaaaaacgagcaggagtgtattaGCAGGTTAACTCAACGGGAAGCCCAAGTTTTTTAACCTGATAATACATGACTGCGAGTTTTTTTGAACAGCTttaaaatctctgatatagatgaATTCATTCTTGTACCAATATTTATTAAAGTAAAGACACtcactgaaaaattttaaacttctcctgtttttttttttcctttatgaattattaatgagtttttgaaccATGTTAAAGAAATTCTCTTCAATACCTCTACAATTATGTTAAGTCTTAAGTTTTATAGTAGTGGTATTGACGTCTTCGAGCGTTTCACCTTTGTTTACTTGTGCGTTTCTCCTTACAGCCAGGTAGTACTCGGGAGAATCGTCGAGAGCAgccacctgaaaaaaaaaaagcatcgCTGTTATTGACAATAACtcacgttttgacaacctgtgcggtagttagactttctaaaagtcctttatttttttcctggttggttaTGCCATTTTATGCATTGAAGCTGGCTTCGCTCACTTTTAATAACttatgagaggtcgacttgtagcaagtctatgCGGTAGTTATCAAAATGAGTTGTTTATCGTCAGTATCTTACAAAACCAGTCTTACTTGACTTGCTATTCGAACAAACATAATTTCAGTCATTAGGCCCATTTCTAGGcgtaataatggaaactttatttgtgtttttgaatgtacaattgtaaatcgcGCTACGTATAGGCactttacaaatgctgcttgagattggattattaaaaagaaaaaaaaacaaaaacaaaacaaaagcccaaaaaaaaatcaaaattgcattaagtctgggctatcccagttcctatttctacaacaaaagatgtaatatgttgctctaatggctatatttatcattttcctGATTATATAAAGTTGTTGCATTTTGTCgatgccaatgtcattcatcatgtctaagaacgtggagcattcatcggagaaaacgccaagggaactcatggagagatttacaaatctcacacatctgtaatttctactcatttcgttgatcaagttcagatatttttctttcttacgcactgcattgttgttaaggttagactcgaataataataataataataataatcgaaTATTTATCCAGGATAACCCTTCAGTACCAAGTACAGTTGTGAACGGGGTCCTGCtggctaaaaaattaaaaatctaataaataagaataaacaaaaaaatatatcaaaagaAAACATGCACTAGGTTGAAAACTACTATTAATAAGAAGtactaaagaataaaaaaaccGTGAAAGGTTACTAGAAGTTCCGATCAGTATTCCCTACCTCCATACCATACAACTTGAGGTTATCTTGAACAGTAAGCACTGTAAGTCCAGCGCTAAGATAACTAGTCAGCAGATTAAACAGCACAGCCCCAGTCAGCATCCACATCATGGCTAGCCCCTTGGCTAAGAACGAACGAGGAGTACGGTCTCCATATCTACATAATACACAAATACAGAATACAACCGGAACTTTAACGTTTCATGATATGTATACTATTAACTTAACCCTAGAGACACGATAGCTTGTAGACTTGATACATCTCTATGCAAATGATAGACAAATGAATGAAGTGGTTAGTCTAACAAGGCATTGTAGTACTGCGTCTGCAAAGGGCAGAAATACAGACATTTAGTTTCAATGACTCGAAGTTCCTTCGCGGACGTTATTTTCTTTACTCTCGGGAGTCTAAATGTGCGGTATTCAATGGTATCAGTGTCATGATACAGAGTCTTGAGATCAACTATCATGCCATTCGGGCAGGGACTGGCTTGAACACTGCATCAAGCGGTCCCTttgattatcatcatcatcatcattttttgtttagttattattattagttttttcgttttccttAATTTTGCAAGGAAACTTGTTGCTGTACGCTTCCAAAGTTTCAAATGTTATTAACTGCTTTCTCGAACGACACTTTGAATAATGGTTCAAGAAGACCCCAAACCTTGTAGTAATGTGGTCCATTTTCATTTGGATTTATTCAGCAAGTTAAGAACCTTGTCTTACCCTACTGTTGCGGCAGTGATGAACCCCCACCATATTGCTTCCCAGAATCCTTTTAAAAACGCAGGCGGGATCTCCTCGGGGTTTTCTGCACAGTCCTTAATTAACAAATGAATAAACATTTTGCAATTAATTTctcaataataacaataattccgttatttaccctcggcagtatttatagcactaatgctagtggggcc

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07258 all species →	COMM_domain	COMM domain	Domain	Interproscan
PF21672 all species →	COMM_HN	COMMD protein HN domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017920 all species →	Domain	COMM domain	Interproscan
IPR047155 all species →	Family	COMM domain-containing protein 4/6/7/8	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16231 all species →	COMM DOMAIN-CONTAINING PROTEIN 4-8 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0032088 all species →	Biological Process	negative regulation of NF-kappaB transcription factor activity	Interproscan
GO:0033209 all species →	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan
GO:0051059 all species →	Molecular Function	NF-kappaB binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22563	COMMD7; COMM domain containing 7	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.