Gene detail

Detailed information of KAM7436863.1 in Porites harrisoni

Genomic Location: Scaffold0222:18885...34241
NR annotation: no NCBI-NR hit recorded
Species abbreviation PHARR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ABFA07_013374

ATGGAAGGTAGTTGTTGTTCCTTTGATAAAAATGGCCGATTTTTAGCACTTTTAACCCCAGATGGACGCCTTAAGTTATGGGATTGTACTTTCGGATCATTAAAGCATGAATATACATCGCCATCACATCTTTCAACGACCTGTACATGCCTCCGTTGGAGCCGAACTTCAAGGTCGTCGGTTGTTCAAAGAAGGAAGAAGCAAAAGACTGCAAAAAATACGACAGATTCAGTTGTTGATTCCATAGCTCTTGGAACATCATCAGGGGATATTTTTGTATATAACATTGCTGCTGGAGAAGTGAACCAGAGACTAGAAGGTGGTCATGACAACAGAGTAAATGATGTGTGTTGGAGTGAAGATGACAGCACATTATATTCTTGTTCAAATGATAAACATATAATAGAATGGAACACAGAAAATGGCCAGAGAAAATGTAAGTGGAAAGCTGACAAACATGGAGTGAGATGCATTGAACTTGGTCCCAAGGGAGATACACTGCTCTCTGCTGGCAGAAGCATTAAATTATGGGATTTAGAGACAAAAGAAAATCTAAGGAAATTTACAGGTCATGCAACGCCAGTGACGTATCTCTCATTTATACCAAGTTCCTTGTCACATGACACAAACGCCAACCACATTCCTAGTAATGGAATCAGTGGTAATTATTTCATTTCCGGAGCAGAACAGGACAGACTTGTGAATGTCTGGTATGTTAACTTGGAAGCTCACAACAAAAATGCGTTAGTTTCACTTTCTCTCACAGACGAACCCATTGTAGTTGATGTTATACGTCACAGCAATCAAGACAAGCCTGTTCACATTGCTGTAGTCTCAAAAGATGGACAAATACATATTTTCGAATATTCACTAAATGGGGGTGTTAAAAAGCCCCTAAGACCAACGAGAACTATTCAGCTAACCAGTTCTGAGAAAAAGGATGGAACACCATCACCTATACCCGTGATGTGTATCCGATTGCTAGCTGAAGCAGAGCCTTCAGTGCAAGTTGCATTTGGTTCAACTGTAAAACCACAGTTTGAAACTTTGGCCTATTCAACAATGGAAGAGCACACATGTCTCATACGTGAAAACTCATCAAACCTACTTCTCAATAATGGAACTCAGGAATCACTTCAAGTGACCAAAGGTCAGAATTCACGGCAAGCAGTGACAACTCTTGGGGCAGGTAATATGGCATTAGCGACACCTTCAGTTGCTACTGAAGAGGGACAAACAAAAGGAACAAAAGGAAAGGATAAAAAAAGAAGTGAAGAAAGAGTGAGACCAGAAGAACAGAGCATAGAGGAGAGGTTAAAAGCAATAAACACAGCATCAGCTGAAACACAAAGAAGAAAAGAAAGTGGTCCCCCGACAGCTGATTCATTAGTGCAGATGTTAATACAGGCTCTTCATAGTCAAGATAACAATCTACTGGAGGATGTTTTATGGCAAGGGGGGAAAAAGGAAACCGTTATGAAAAATACAATTAAAGGACTTCCAGTCACACTCACTGTTCCATTCTTGACAGAGCTTGTTCACAAGATTGAAGCCATGCCTTGGAGAGGAGCGCAATTAGTGTTATGGATCAAGCAAATTTTAAGTACTCATATGGCTTATTTAATGACGGTCCCAGACCTTGTGAAGACCCTTGGTGGACTATACGCCATGATGGAGTCACGTGTGAGCACTTATGGTAAACTGTGCAAACTGCAAGGTCGTTTGGATTTGATGCTGTCGCAGGTGGATTCTCAGAGCTATAACACTGCAGATGATACAATTCCTGGGCCATCAGTTGTCTATCAGGAGGAAGACTCTGATGAGGAACCACTTGTACCTATTGAGGCCGAAGACTCGGAATCCGATGGAAATTGGGAAGAAGATCTTGATGAAGAAGAAGCCTCAGAATCAGAATCCAAAGAAGAAAGTGAGGAGGAGACTGAAGCAGGAAATGATAATGATGGTGATGATTACGATGAGGATGATGTTGAATCTGAGGAGGAAAGTTAA

Transcript

rna-g13700.t1

CACGTGCAAATGGAGTATGAAATATGGAAGGTAGTTGTTGTTCCTTTGATAAAAATGGCCGATTTTTAGCACTTTTAACCCCAGATGGACGCCTTAAGTTATGGGATTGTACTTTCGGATCATTAAAGCATGAATATACATCGCCATCACATCTTTCAACGACCTGTACATGCCTCCGTTGGAGCCGAACTTCAAGGTCGTCGGTTGTTCAAAGAAGGAAGAAGCAAAAGACTGCAAAAAATACGACAGATTCAGTTGTTGATTCCATAGCTCTTGGAACATCATCAGGGGATATTTTTGTATATAACATTGCTGCTGGAGAAGTGAACCAGAGACTAGAAGGTGGTCATGACAACAGAGTAAATGATGTGTGTTGGAGTGAAGATGACAGCACATTATATTCTTGTTCAAATGATAAACATATAATAGAATGGAACACAGAAAATGGCCAGAGAAAATGTAAGTGGAAAGCTGACAAACATGGAGTGAGATGCATTGAACTTGGTCCCAAGGGAGATACACTGCTCTCTGCTGGCAGAAGCATTAAATTATGGGATTTAGAGACAAAAGAAAATCTAAGGAAATTTACAGGTCATGCAACGCCAGTGACGTATCTCTCATTTATACCAAGTTCCTTGTCACATGACACAAACGCCAACCACATTCCTAGTAATGGAATCAGTGGTAATTATTTCATTTCCGGAGCAGAACAGGACAGACTTGTGAATGTCTGgtatgtTAACTTGGAAGCTCACAACAAAAATGCGTTAGTTTCACTTTCTCTCACAGACGAACCCATTGTAGTTGATGTTATACGTCACAGCAATCAAGACAAGcctgTTCACATTGCTGTAGTCTCAAAAGATGGACAAATACATATTTTCGAATATTCACTAAATGGGGGTGTTAAAAAGCCCCTAAGACCAACGAGAACTATTCAGCTAACCAGTTCTGAGAaaaagGATGGAACACCATCACCTATACCCGTGATGTGTATCCGATTGCTAGCTGAAGCAGAGCCTTCAGTGCAAGTTGCATTTGGTTCAACTGTAAAACCACAGTTTGAAACTTTGGCCTATTCAACAATGGAAGAGCACACATGTCTCATACGTGAAAACTCATCAAACCTACTTCTCAATAATGGAACTCAGGAATCACTTCAAGTGACCAAAGGTCAGAATTCACGGCAAGCAGTGACAACTCTTGGGGCAGGTAATATGGCATTAGCGACACCTTCAGTTGCTACTGAAGAGGGACAAACAAAAGGAACAAAAGGaaaggataaaaaaagaagtgaaGAAAGAGTGAGACCAGAAGAACAGAGCATAGAGGAGAGGTTAAAAGCAATAAACACAGCATCAGCTGAAACACAAAGaagaaaagaaagtgGTCCCCCGACAGCTGATTCATTAGTGCAGATGTTAATACAGGCTCTTCATAGTCAAGATAACAATCTACTGGAGGATGTTTTATGGCAAGGGGGGAAAAAGGAAACCGTTatgaaaaatacaattaaaGGACTTCCAGTCACACTCACTGTTCCATTCTTGACAGAGcTTGTTCACAAGATTGAAGCCATGCCTTGGAGAGGAGCGCAATTAGTGTTATGGATCAAGCAAATTTTAAGTACTCATATGGCTTATTTAATGACGgTCCCAGACCTTGTGAAGACCCTTGGTGGACTATACGCCATGATGGAGTCACGTGTGAGCACTTATGGTAAACTGTGCAAACTGCAAGGTCGTTTGGATTTGATGCTGTCGCAGgTGGATTCTCAGAGCTATAACACTGCAGATGATACAATTCCTGGGCCATCAGTTGTCTATCAGGAGGAAGACTCTGATGAGGAACCACTTGTACCTATTGAGGCCGAAGACTCGGAATCCGATGGAAATTGGGAAGAAGATCTTGATGAAGAAGAAGCCTCAGAATCAGAATCCAAAGAAGAAAGTGAGGAGGAGACTGAAGCAGGAAAtgataatgatggtgatgattaCGATGAGGATGATGTTGAATCTGAGGAGGAAAGTTAAATGTATAAATTCATGCGAATGCAGACACACCACTCACTGTAATTACGTTTTACAGAATAAAATAGTTGTTATATTGGTTTTAATGTTGGCTCTTTTTTGCTTGTTGTGCAGTTTTTTCACCCTAAGAGAAAAGGAGATCCACTAACAGTCAACATTCCCCAGATATTTCACAGCAAATGAAT

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04003 all species →	Utp12	Dip2/Utp12 Family	Family	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR007148 all species →	Domain	Small-subunit processome, Utp12	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR052414 all species →	Family	U3 small nucleolar RNA-associated WD repeat-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44267 all species →	WD REPEAT-CONTAINING PROTEIN 43	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000462 all species →	Biological Process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14546	UTP5, WDR43; U3 small nucleolar RNA-associated protein 5	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.