Gene detail

Detailed information of KAM7438957.1 in Porites harrisoni

Genomic Location: Scaffold0171:765849...780157
NR annotation: no NCBI-NR hit recorded
Species Porites harrisoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ABFA07_011654

ATGTCTTCCGGAGATAGTGCATATGTTGAAGAAAATTTTCGCTCAAGTCCAGATGGCCATGGTATTACACAGTCTGGGTCATCGCAAGATGGTGCATTACCAACTCCCTTGCATGCAGCTGCTGTAAACGGAAATAAAGCCCTTCTTCGAAAGATTAAGTCATCAGTTGTGCAACATTGTACATTGTACTTGTGGGTTGCTGATGTACTTTCCAAAGAAAATGAAAGACAATTTCTTAACAAAGGAGATCAATTTGGCCGCACTCCACTGGTATACAGTGTGTTAGGAGACAGACTTGATTGTGCGGAGACACTTCTTAAAGCTGGAGCCAATGTCAGCTCATGTGACATGGATGGCAGGACTCCCCTGCACTGGGCAGCTTACCAGGGAAACTTGAAATGTGTGAAGCTGTTGTTAGCTAAGGGAGCAAACTGGAAAGTAAAAGATAGCAAAGGAAGGACCCCACTTCACTTTTCCACCAGCCATCAGTCTTCTAAGTGTCTGAGTTTGTTATTGAAGCAAGTCCCTAAAGGTGAAGCAGATGAACTTGATAGTGACCTGATGACATCACTTCACTGGAGTGCATCGTATGGCAATACCGAACATGTCAAGTTGCTGCTGAAAGCTGGTGCTGATGTCACACTCACTGACAAAGAAAAGAGAACCCCGCTTCACTGGGCAGCAACAAATCCTGATCCTGCTGTTTTGAAACTCATTTTGGATGCAAATTTTGACATAATTAGCCACCAAGACAGCGAGGGTAGAACAGCTCTTCATTTAGCTGTAGCTCAACATAATGAAGCGGCGGTCAGGGCGTTACTGGCTGTTGGGAAGTGTCAAGTATCCGTTCAAGACAACATGAAACGTTCACCACTACACTGGGCGGCTGTATTAGGCAACTCTCAGCTGGTGAAATTATTGCTGGATAAAGGAGCAGACTTCACTGCCGCAGATGACAATGGAGCCACTGCACTTCATTACGCAGCGCAGGGTAACTTCAGTGAGACTGTAGAGGTGTTCTTGTCATTTGATGATATAGAGGATATCCCCGATAAAGAAGGCAGAACAGCACTCATGTGGGCTGCTGGAAAAGGAAGTGAAATGGCGTTAGAGACGATGCTAGACCACGAACTTGATGTACACACAAAGGACAATACAGATGGTACCGCGCTTCATGCAGCTGCGTATTCTGGTCGCGTGGATTGTGTGGAGCTGCTTGTTGAATTTGGAGCCTGCGTTAATGCTGTGGACAGGTTACAGCACACACCCCTCTTCCGCGCATGCGAAATGGGGCACACGGAAGTTGTCCACAATTTGATTCTAAATGGGGCGGCAATAGACCTTGAAGACTTAGACGGTCGATCACCGCTTCATTGGGCTGCGCTTGGTGGTCACGCTCCTATCTGCCTCGCTTTAGTGGAACAGGGTTTAGCTGCAGACAGCAGAGATAAAATGAACCGTACTCCGTTGCAATGCGCAGCTCATGGTGGATTTGTTAAGTTCATGACAGTTTTAATAGAGCATGGTGCGTATGTGGATCATCAAGACAAAGACGGCATCACAGCTTTACATCGGAGCTGTGCATCGGGACATTTGGAAGCTGTTAAACTGCTTCTTAGGAACAAAGCATTTCCTAACTTTACTGAGGGGCACACTGACAGATTGACGCCTCTTGATTACGCCATAATTGGTGACCATCAAGATGTTGCTCAGTATATGATCGAGCAAGGAGCCTTAACTATAAATGGAATCGAGGATATAGCTTCCACTACTATTCAGAAATGCTGGCGCGGTCATCGAGTGCGCAAAGGGTTTTTAGTCCGGAAAGACCTGTTCGTAAAACACGAACGGGTGAAAAAGGTCAGGAAACGTGCCAGTGTAGCGGGCCAAAGAAAGACTCCGGACTTGTGTGCTAACCAGTCTTCTCGCGGTGTGTCTCCAAGAGAAATAGAAAAGTGTACCATGGATAGCTCGAGAAGCCACGAAGTCATTCTGGAGCAGGAACAACAGAGGAGAGAAAGTTTGTCTTCAAGTGAAGAGCAAAGACAGTCTCAGGTAGATCTCTTGGTTCTAGAGTCCCAGCTGCCAAGAAGCGACGTTGTACAAAATATCACGACTGAAAGGATAGTCGATAATTTATCACAAGGATTAAGCGAGGAACAAACTATTTCGACGTCTTTACCCCTTTCACCAAGAGAGGAGGAGTCTAGAAAGCGTTCTCTTGCTAATTCCGAGCTGGTGAAAATTGTTTCTTCTGTGTTACTGGACGAAGATGTGGAACTGGACGAAGGATTTTCCTTTTCCAGCAGTAAAAGCTCTTTGAAAGAAAGTGCTACAGAAAGTGATTTTATTGATAACGAGCATTCTGAATCAAGAGTGACCAAAATGCACAGCGCTGTTTCAAAGACAGAGCTCGCACGAAAAGAGCGTGAACGACTTCATTTAATACGTACGAAAGTGAATGCAGCTGTAGCGATTCAGCGATGGTTTAGGAAGTGGACCTCAATTAAACGCGAACTTAGAGAGCGCGATATGATGATGCGTGACGTGACAAAAGAACAAGAACAACTCTGTGAAGAAGTCGCTGCTCTCACGATACAATTAGCATGGAGAAAACACATGAGAACTAAGTTTGAAAAAAAGAAAACCATAAATAAAACCGATAAACCGAAAAAAGCTGCCCCAACTTCTGCATCAGGAAAAACTGAACAAAATGATATAAATATTTACGGGCGTCCTATTCAAGAAGGACCACAGACAGCTGTTGTAAATTCTCGCAAGGGTAAAGGACGAGGGCGGTCTCCTTACATGAAGTATCAACCTTCTCCCGCTGCATTGTCTTACAACATGGCAATGGATTTATACCATCCCCTGGGATCGAGGCAGGGTAGTCGCACTGCTATGGTAACTGCTAGCCCAAGAATGAAATCTGGGTGCATGAAGCGAACTTATGGATGGACTCATGATGCTAATTTTTCAAGGAAAATTAATGGTCAGCGGTCGGGATGGAAAGATCCCAAAACTGGTTCGCTTTAA

Transcript

rna-g11951.t2

ATGTCTTCCGGAGATAGTGCATATgttGAAGAAAATTTTCGCTCAAGTCCAGATGGCCATGGTATTACACAGTCTGGGTCATCGCAAGATGgtGCATTACCAACTCCCTTGCATGCAGCTGCTGTAAACGGAAATAAAGCCCTTCTTCGAAAGATTAAGTCATCAGTTGTGCAACATTGTACATTGTACTTGTGGGTTGCTGATGTACTTTCCAAAGAAAATGAAAGACAATTTCTTAACAAAGGAGATCAATTTGGCCGCACTCCACTGGTATACAGTGTGTTAGGAGACAGACTTGATTGTGCGGAGACACTTCTTAAAGCTGGAGCCAATGTCAGCTCATGTGACATGGATGGCAGGACTCCCCTGCACTGGGCAGCTTACCAGGGAAACTTGAAATGTGTGAAGCTGTTGTTAGCTAAGGGAGCAAACTGGAAAGTAAAAGATAGCAAAGGAAGGACCCCACTTCACTTTTCCACCAGCCATCAGTCTTCTAAGTGTCTGAGTTTGTTATTGAAGCAAGTCCCTAAAGGTGAAGCAGATGAACTTGATAGTGACCTGATGACATCACTTCACTGGAGTGCATCGTATGGCAATACCGAACATGTCAAGTTGCTGCTGAAAGCTGGTGCTGATGTCACACTCACTGACAAAGAAAAGAGAACCCCGCTTCACTGGGCAGCAACAAATCCTGATCCTGCTGTTTTGAAACTCATTTTGGATGCAAATTTTGACATAATTAGCCACCAAGACAGCGAGGGTAGAACAGCTCTTCATTTAGCTGTAGCTCAACATAATGAAGCGGCGGTCAGGGCGTTACTGGCTGTTGGGAAGTGTCAAGTATCCGTTCAAGACAACATGAAACGTTCACCACTACACTGGGCGGCTGTATTAGGCAACTCTCAGCTGGTGAAATTATTGCTGGATAAAGGAGCAGACTTCACTGCCGCAGATGACAATGGAGCCACTGCACTTCATTACGCAGCGCAGGGTAACTTCAGTGAGACTGTAGAGGTGTTCTTGTCATTTGATGATATAGAGGATATCCCCGATAAAGAAGGCAGAACAGCACTCATGTGGGCTGCTGGAAAAGGAAGTGAAATGGCGTTAGAGACGATGCTAGACCACGAACTTGATGTACACACAAAGGACAATACAGATGGTACCGCGCTTCATGCAGCTGCGTATTCTGGTCGCGTGGATTGTGTGGAGCTGCTTGTTGAATTTGGAGCCTGCGTTAATGCTGTGGACAGGTTACAGCACACACCCCTCTTCCGCGCATGCGAAATGGGGCACACGGAAGTTGTCCACAATTTGATTCTAAATGGGGCGGCAATAGACCTTGAAGACTTAGACGGTCGATCACCGCTTCATTGGGCTGCGCTTGGTGGTCACGCTCCTATCTGCCTCGCTTTAGTGGAACAGGGTTTAGCTGCAGACAGCAGAGATAAAATGAAcCGTACTCCGTTGCAATGCGCAGCTCATGGTGGATTTGTTAAGTTCATGACAGTTTTAATAGAGCATGGTGCGTATGTGGATCATCAAGACAAAGACGGCATCACAGCTTTACATCGGAGCTGTGCATCGGGACATTTGGAAGCTGTTAAACTGCTTCTTAGGAACAAAGCATTTCCTAACTTTACTGAGGGGCACACTGACAGATTGACGCCTCTTGATTACGCCATAATTGGTGACCATCAAGATGTTGCTCAGTATATGATCGAGCAAGGAGCCTTAACTATAAATGGAATCGAGGATATAGCTTCCACTACTATTCAGAAATGCTGGCGCGGTCATCGAGTGCGCAAAGGGTTTTTAGTCCGGAAAGACCTGTTCGTAAAACACGAACGGGTGAAAAAGGTCAGGAAACGTGCCAGTGTAGCGGGCCAAAGAAAGACTCCGGACTTGTGTGCTAACCAGTCTTCTCGCGGTGTGTCTCCAAGAGAAATAGAAAAGTGTACCATGGATAGCTCGAGAAGCCACGAAGTCATTCTGGAGCAGGAACAACAGAGGAGAGAAAGTTTGTCTTCAAGTGAAGAGCAAAGACAGTCTCAGGTAGATCTCTTGGTTCTAGAGTCCCAGCTGCCAAGAAGCGACGTTGTACAAAATATCACGACTGAAAGGATAGTCGATAATTTATCACAAGGATTAAGCGAGGAACAAACTATTTCGACGTCTTTACCCCTTTCACCAAGAGAGGAGGAGTCTAGAAAGCGTTCTCTTGCTAATTCCGAGCTGGTGAAAATTGTTTCTTCTGTGTTACTGGACGAAGATGTGGAACTGGACGAAGGATTTTCCTTTTCCAGCAGTAAAAGCTCTTTGAAAGAAAGTGCTACAGAAAGTGATTTTATTGATAACGAGCATTCTGAATCAAGAGTGACCAAAATGCACAGCGCTGTTTCAAAGACAGAGCTCGCACGAAAAGAGCGTGAACGACTTCATTTAATACGTACGAAAGTGAATGCAGCTGTAGCGATTCAGCGATGGTTTAGGAAGTGGACCTCAATTAAACGCGAACTTAGAGAGCGCGATATGATGATGCGTGACGTGacaaaagaacaagaacaaCTCTGTGAAGAAGTCGCTGCTCTCACGATACAATTAGCATGGAGAAAACACATGAGAACtaagtttgaaaaaaagaaaaccataaATAAAACCGATAAACCGAAAAAAGCTGCCCCAACTTCTGCATCAGGAAAAACTGAACAAAATGATATAAATATTTACGGGCGTCCTATTCAAGAAGGACCACAGACAGCTGTTGTAAATTCTCGCAAGGGTAAAGGACGAGGGCGGTCTCCTTACATGAAGTATCAACCTTCTCCCGCTGCATTGTCTTACAACATGGCAATGGATTTATACCATCCCCTGGGATCGAGGCAGGGTAGTCGCACTGCTATGGTAACTGCTAGCCCAAGAATGAAATCTGGGTGCATGAAGCGAACTTATGGATGGACTCATGATGCtaatttttcaaggaaaattaATGGTCAGCGGTCGGGATGGAAAGATCCCAAAACTGGTTCGCTTTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00612 all species →	IQ	IQ calmodulin-binding motif	Motif	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF13637 all species →	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000048 all species →	Binding_site	IQ motif, EF-hand binding site	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24188 all species →	ANKYRIN REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19626	INVS; inversin	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.