Gene detail

Detailed information of KAM7439167.1 in Porites harrisoni

Genomic Location: Scaffold0166:531498...553736
NR annotation: no NCBI-NR hit recorded
Species Porites harrisoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ABFA07_011433

ATGGCAGTTGAATCGACCTCAAAATCGGACATTTTTAGAGACGTCAGATTCTTCCTAGCGGAAGAGAGCAATGAAGAGGTGAAGCAAGTGCTGAAGTCAGGTGGTGCAGCCCGTGAGTTTTATGTCAGTGATCTTGTGACGCATGTTATTGCTAAAGACACCGGTTTTCCTCAGTTTAGTGAAGCCAAGGAGTGTAATTTAACCATCGTTAAGCCAAAGTGGGTCTTTCTTAGTGCCTCATGTAAAATGTTGTTGCCATGTGAACCCTTCAGATCTGATTCAGAACAGCTCTTCAGTGGAAAAGTAGTCTGTCCTTCACAGATTCCAGAAGAAGACAGAGATGCATTATGGGCAATGGTTACATACCATGGTGGTCAGTGTCAGTTGAACCTTAATCCCAAATGTACTCATCTTGTCATTCCGCATCCAACTGGAGCAAAATATGAATGTGCTTTAAAACATTCCGACATTATCAAGATTGTAACACCAAGTTGGATAGTTGATAGCATTAAAGAAAAGAAAATCCAGGATGAAGCAAGATATGTCCCTTGCAAAGCAGTAATAAGAGCAGAGACTGAAACAACAAGCTCACTCCTAACGCCAGATGATAATGACAAAACAACAACCACCCCACTTCCAGCAAGCATCCAACAAAAATCACCTCCCTCTGTTTCTACTCCAGTAACTTCAGCACCTAAGGTGCCAACCACGTTGCCATCAACATTAATGAGCCCAGTATCTCCTTCAGTTACTGCTGCGGCAGATGGGAAGCCTTCAGAGGCAGAAAGTAACATCACACGTGGAGGTGAGGCTGCTGTAGGTGAGAAGAGTGCTATGGAAGTTGGGGCTAAATGTCAGACCAGTGAGACAGTGCAAGTTAAGTCAGACGCATTGAGTGGAGGGGTGAAAATTGGTGAAAATAATAATGAGATTTGTGAAAGTAACAAAGAAAATGAGGATTTATCAAAGAAAAACAGCCCAGGAAAGTCAACAGAGAACCAAGGATCCAATTGCTTGGCTGGCTGTGTTTTTGTTATATCAGATTATCAAGAATGTATGGACCATGATATCCTTGATACTTGGATGGATGTTGTGGAGCAGCATGGTGGTGTAGTCAGCCCATTTTATGGCAAGCGTTGCACTCATTTACTTTGTCTAAACCAACATGGAAGTCTTTATAAAAAGGCCATTGCTGATGGTAAGAGAATTGTAACAGCACATTGGCTAAATGATGTTTTGATGGCGAAGGTGATGTTTCCACCATCTAATCCACTTCACCTTCCTGTTCCATTCAAAGAAAAAGTCAACCAGTGTAGAAGTATGGTGATTACTGTGACAGGATATACAGGTTCAGAACGCACTCTTTTAAAGAACATGATCTTCATTGTTGGTGCGAGATACACTGGTTATTTAACACGAACTAACACTCACATTATCTGCAAAAGTCCCACTGGAGATAAATATAACAAAGCCAGAGAATGGGGAATCCACTGCGTGAATGCCAAATGGCTTGGTGACATCGTTACAACTGGATACCCATCACCAAGCAACCTTGTTAGATATTCAACTCTAGGTGATGCGACTGAACTACAAATAACCAAAGACCTTCTTGTCAGGGAATTAATACTTCCTTGGCAGACATTTGCTGATGAATCGGGCACTGTGCAGACTCCTGTCAATGGAAAAAGAAAGCTTGGAGACCAGAGCACTCCTGAAGATAATGACCAAGTTAAGAGAGCAAGAAACTCCACAAGCCCTGCTGCTTCTGAAAAAAGAGAAGGTCCCAGAATTTTATTCACTGGTATAACTCCATCTGAAGTGTCAAGACTAACGGAGATTGTTATTGATCTTGGAGGCACAGTTGTTGCTTCTGTAAAACAATGTACCCACCTTGTGACAAGAAAGATCATTCGTACAGTGAAGTTTCTGTGTGCAATCTCTGTAGCGCACTATGTTGTCAGTCCTGACTGGATCGATAAAAGTCAGAAGTCAAACAGTCTCCTTGACCCGGCTGAATTTACCATCAAAGATGCCCAGTCAGAGGAAATGTATGACATGAAATTGACAACGTCGCTACAAAGAGCAAGAGCACGCCCTCTTTTGCAGGGCATCTCAGTATATGTGACTCAAAACATCGAGCCCAGTCCCGCATCTATGAAAGAAATCATCCAGTGTGCGGGAGGCCAGGTGTTGCCGAAAGTTCCCTCACAGCAGCAGTTGGCGGACTTCAAAAAGAATTTAACTGAACAGGGAACACCAACCTTGTTAGTAATAAGCTGTGACAGGGATTTTCAGTTATGTTCCGAATTTATGAAGAATGGATTTGACATACACAGCGCAGAACTTGTCCTGTCTGGTGTCTTGAAACAGCAGTTGGATTTAGATTTGTATCTTTTGCGATGA

Transcript

rna-g11725.t1

TGCCATGTCACTTTCAACATGGTGGATAAGCAATGTATTTGAGCATGGCAGTTGAATCGACCTCAAAATCGGACATTTTTAGAGACGTCAGATTCTTCCTAGCGGAAGAGAGCAATGAAGAGGTGAAGCAAGTGCTGAAGTCAGGTGGTGCAGCCCGTGAGTTTTATGTCAGTGATCTTGTGACGCATGTTATTGCTAAAGACACCGGTTTTCCTCAGTTTAGTGAAGCCAAGGAGTGTAATTTAACCATCGTTAAgCCAAAGTGGGTCTTTCTTAGTGCCTCATGTAAAATGTTGTTGCCATGTGAACCCTTCAGATCTGATTCAGAACAGCTCTTCAGTGGAAAAGTAGTCTGTCCTTCACAGATTCCAGAAGAAGACAGAGATGCATTATGGGCAATGGTTACATACCATGGTGGTCAGTGTCAGTTGAACCTTAATCCCAAATGTACTCATCTTGTCATTCCGCATCCAACTGGAGCAAAATATGAATGTGCTTTAAAACATTCCGACATTATCAAGATTGTAACACCAAGTTGGATAGTTGATagcattaaagaaaagaaaatccaGGATGAAGCAAGATATGTCCCTTGCAAAGCAGTAATAAGAGCAGAGACTGAAACAACAAGCTCACTCCTAACGCCAGATGATAatgacaaaacaacaaccaCCCCACTTCCAGCAAGCATCCAACAAAAATCACCTCCCTCTGTTTCTACTCCAGTAACTTCAGCACCTAAGGTGCCAACCACGTTGCCATCAACATTAATGAGCCCAGTATCTCCTTCAGTTACTGCTGCGGCAGATGGGAAGCCTTCAGAGGCAGAAAGTAACATCACACGTGGAGGTGAGGCTGCTGTAGGTGAGAAGAGTGCTATGGAAGTTGGGGCTAAATGTCAGACCAGTGAGACAGTGCAAGTTAAGTCAGACGCATTGAGTGGAGGGGTGAAAATTGGTGAAAATAATAATGAGATTTgtgaaagtaacaaagaaaatgagGATTTATCAAAGAAAAACAGCCCAGGAAAGTCAACAGAGAACCAAGgatccAATTGCTTGGCTGGCtgtgtttttgttatatcaGATTATCAAGAATGTATGGACCATGATATCCTTGATACTTGGATGGATGTTGTGGAGCAGCATGGTGGTGTAGTCAGCCCATTTTATGGCAAGCGTTGCACTCATTTACTTTGTCTAAACCAACATGGAAGTCTTTATAAAAAGGCCATTGCTGATGGTAAGAGAATTGTAACAGCACATTGGCTAAATGATGTTTTGATGGCGAAGGTGATGTTTCCACCATCTAATCCACTTCACCTTCCTGTTCCATTCAAAGAAAAAGTCAACCAGTGTAGAAGTATGGTGATTACTGTGACAGGATATACAGGTTCAGAACGCACTCTTTTAAAGAACATGATCTTCATTGTTGGTGCGAGATACACTGGTTATTTAACACGAACTAACACTCACATTATctgcaaaagTCCCACTGGAGATAAATATAACAAAGCCAGAGAATGGGGAATCCACTGCGTGAATGCCAAATGGCTTGGTGACATCGTTACAACTGGATACCCATCACCAAGCAACCTTGTTAGATATTCAACTCTAGGTGATGCGACTGAACTACAAATAACCAAAGACCTTCTTGTCAGGGAATTAATACTTCCTTGGCAGACATTTGCTGATGAATCGGGCACTGTGCAGACTCCTGTCAATGGAAAAAGAAAGCTTGGAGACCAGAGCACTCCTGAAGATAATGACCAAGTTAAGAGAGCAAGaaactCCACAAGCCCTGCTGCTTCTGAAAAAAGAGAAGGTCCCAGAATTTTATTCACTGGTATAACTCCATCTGAAGTGTCAAGACTAACGGAGATTGTTATTGATCTTGGAGGCACAGTTGTTGCTTCTGTAAAACAATGTACCCACCTTGTGACAAGAAAGATCATTCGTACAGTGAAGTTTCTGTGTGCAATCTCTGTAGCGCACTATGTTGTCAGTCCTGACTGGATCGATAAAAGTCAGAAGTCAAACAGTCTCCTTGACCCGGCTGAATTTACCATCAAAGATGCCCAGTCAGAGGAAATGTATGACATGAAATTGACAACGTCGCTACAAAGAGCAAGAGCACGCCCTCTTTTGCAGGGCATCTCAGTATATGTGACTCAAAACATCGAGCCCAGTCCCGCATCTATGAAAGAAATCATCCAGTGTGCGGGAGGCCAGGTGTTGCCGAAAGTTCCCTCACAGCAGCAGTTGGCGGACTTCAAAAAGAATTTAACTGAACAGGGAACACCAACCTTGTTAGTAATAAGCTGTGACAGGGATTTTCAGTTATGTTCCGAATTTATGAAGAATGGATTTGacaTACACAGCGCAGAACTTGTCCTGTCTGGTGTCTTGAAACAGCAGTTGGATTTAGATTTGTATCTTTTGCGATGAGGAATGTCTAACTAGTTGATGCATAATATTCTCTTCTTGGAGTTGAAGAAAAACGCTCTTTCAGGGTCTTCCACACTAAGTTGTCAAAAGTGTTCTCTTTCCTACCTTGGGTTTCTCGGATAAAATTGCGTCCTACCGCTCGAATGTGAATCCGCGTTTAGTTTagtcagcgtgcaaagaaagtagtgtccgatagcccggggctagtggattttgctatcgggctagtgaattctgtttttaacttgcccgacgggcaagtgatgtttcatgaggaatttgaataacagaagaacaaaaagtttttggggctagttgaaatgacgtctgggctattaaaatgctagcttcagcttgcccgaatggcaagctgtaaaaatgattttctttgcaccctgttagTTCTGATTAGGAGTGATGCTGTCAGTCGCTTTAAGAACCAGTGTAGAGGTCATTATGCTAACAGTGTATCGCAATTGATTGAAACCATTTACTACGAAAGTGTGTATCTTGAAGCTTCTTAACCTTACAATCAGATACAAACTGTAATCAGCACGGGACGTCCAGCGTCAAAAGAGTATGGCTTGAAGCGGTCAGTCAAGAAATTCACAGCTCTATGAAGAAAATGCTTACGCACCAAACAAAATTAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16770 all species →	RTT107_BRCT_5	Regulator of Ty1 transposition protein 107 BRCT domain	Domain	Interproscan
PF00533 all species →	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan
PF12738 all species →	PTCB-BRCT	twin BRCT domain	Family	Interproscan
PF16589 all species →	BRCT_2	BRCT domain, a BRCA1 C-terminus domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR051579 all species →	Family	DNA Damage Response and Transcriptional Regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23196 all species →	PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10728	TOPBP1; topoisomerase (DNA) II binding protein 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.