Gene detail

Detailed information of KAM7439554.1 in Porites harrisoni

Genomic Location: Scaffold0158:530855...541484
NR annotation: no NCBI-NR hit recorded
Species Porites harrisoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-g11397.t1

TGTTTTGCCTGAATTTCTCTAGTAACGTTATTTCATAATGTCCCGCCAATCGGCAGTTCGAGCCGATAACAGAAAAGTGAGTGCGGAATTATTTGTTTTGACACATGGAGCACTTGTGGCACAGCTCGTCAAAGATTATGAAAGCGACGAAGAAGTTAACAAACAACTTGATAAAATGGGCTACAATATTGGAGTAAGATTAGTGGAAGATTTCTTGGCAAGATCAAATGTCGGTCGGTGTCACGACTTCAGGGAGACTGCTGATGTTATTGCCAAGCTGGGCTTCAAAATGTTCCTTGGATTTTCCCCAGTGGTAACAAACTGGAGTGCAGCATCGGATGAATTCTCTTTGATCTTGGACAACAACCCTCTGGCAGAGTTTGCTGAGTTACCAGAAGGTCATGAGGGGCTTCTGTTTTCAAACATTCTCTGTGGTGTGTTGAGAGGAGCCCTAGAAATGGTGCAAATGGAAGTTGATGTGTGGTTTGTTCAAGATTCCTTGCGTGGAGACGATACTACTGAAATTAGACTCAAATTTGTTAGGAAATTAGAAGATGCTTTGCCAGCTGGCGAGGATTAGACACTTTATTATGTATTTTGACATTTAATGTAATGTAAAAACAGCAGTTTTAGTAACACAAAATGTGATCAGGACTAAAGCTTTAGGGAAAGAGAGAATTTGGAATCTTAATATTTCTTCTGCACAAGAAATAAGCCATTTCTGAGTTGCTCTAAACCTCTGCTTCATAGCGAGGCTAAGTGTGAAGCCATTTATATGAAactaattattaattattaattattaatttttaattattttaattattcttATGCAAATTAAACTCGTTTTCACAATAAAGGTTTTgaacttagggcctgtttacatggaggtggggggccCGAGGTGggtggggtaacctgcctgtgcatataatctctcatattaatttgatcacgtttacatgatgggTGAGGTGATCATATGAGAGTTTATATGGACAAGCGGGTTACCACACCTAAGCGAGTTACCTAACCTACTTGGATCCCCCACtgtcatgtaaacaggcccttagcctcgttttgaatgtgagagtttttggaactcgaaaatggcctattcgTGAAATACTTACATGTAAATTATTGTTATCCATTCAGTTACTTGACGAACTAATCTCGCAGTTAAATAGTTgtttcattaaaaatatttgtGGCCCTTAATTCTGATTAGCTAAGGTTATCCGGTTTCTTCAGTTTCAGTCAGTGTAGGTTGTTTCGATTTTAGGTAGCTGGAACATAAATAATCTGACAAAAAaggatcattttgttaattataCCTGTCAAAATCTTATTTGTTTGGGAATCATAGGCCTTATGCTTGTTTGGCGAATAGGTTGTAATCTAAGGTAGCAGTCCTTGAAACCAATCGAAATTTGCATTCCCTGACCGAGAGGAATGGTTCCTTATATCATCATTAAAAAAGACAATGGACAGGGTTTTTTTGCCAAGTGATTTGGCAGGGTATACTCACACCATGCGTGCAGAGTAAAACGTGAGCTGGAAAGCACAGTCGGTAGAGCACTTTACTGtagagcgggaggtcgtgggtttgtttctgttgtttcccAGGGCCGGATCAATACTTTGTAGGGTCTATGGCTGGGAAATGAAGGCACTGCCCCCTGAAACGGCTACAGCTTTgtgtggctcggatgaccacgtaaaatggcggtcctgTCTTTAGGGTTACCGCCCGGGGTTACCGATCGTTTCGACACaagtttaataattattcagtCGAGTTGTAAATATTTTCACGtgcttggcttaaagaacgaagaatGTTCACCCAAAATGCTTTCCTTGTTCACGCGCAAGCTATACTTGAAGTGATCGAAATTTATGTgcaatttcactgcttgagtttgTATCCAAACGACTGGTTACCGTCTTTAGAAGCGGACGTAAAAATTGTGTCCAATTAGCACTTTCTTGCTAACACGTTAGCACTCAAATAAAGGACTTATTTAGCCCTTTTTTTGTAAGAAAGTGCAACTGCCTCTTGCATTTACACCCCAACCGTCTTGCGCCAAGTGATTATTCTTAACAATCAATCCGAAATGGTTCTCTCTTCTTGAACCAACTTAGTAACTGACCCAAGtttcaggggcatccaacgagaatatactatatatatatagttactatatatatatatatagttcaaaaccactttaacatgacattgttaaacgtattttagtatttaaacggtagatataggaatatttttaccccctaaaaatttttcatctgtcggcggatttcctagctggaaaagtgatctgaaaattaaaacttaccttttcgaaaatttcagccagaaacaaggctcccgaaaattctaggtgacctttttaggcggtacaaatccgttaaaaatggtcaattacaccattttttagatgttcgaaaatcctaggagcgGCGGGCaatcaagaaattttacaacaaatgttccgaaaattctagatctcaaatcctCTTCCGAACAGTTTTtctccgaaaattgacgttgggtgcccctgaagtttACGACACATACTGGCGCCATTTCATTTTCAGAGCATTTAAGACACTCGAAAAGACTTCAGTTGAGTTGTCTAAGTAAGTACGGATACATGTCGCTAACACGTGATATACAATGTCGGAATCAACAAAGGCCGTCAAATAACAGCTTATGTGATTTATTGGCTTCGGAACTGCGTTGTGTAATAGTCAGCTCTACTGAATTTAGCGAAACACATTCGAAATCTACACATTAAATTCATTTGTGTCTTGTCATTTTGCTTAATACgtctaaaagaaagaaaatagtgAATAAAAGTTAATTACATTTAATAGCAAGGGATTTCTTCCGGAACAGTTTAGCGAACAATTTTTGCAGTAAAATTTGTTCGCGTCTGGAAAAAGCAACTGAAGGGTTACAGTTTGCGGATTTTATATCTTGCTTTGACAAGAATAATCTATTAAAGCTAAGACAAAGAGAACTTTCTAGAGTTAAATATAATTGAAAAGAATCTTATTGCATTTTTGACAAATTGATGTGCTGCGACGTCTGGAAGGTTGTCGAAGCTCTTTTTGTAAACTTGAAGGAAACAAGACTAAATATCCGGAAGTAATGAAAATGCCACCTCAAGCAAACACAGACCGGGAAAACGTCTGTAAAAGCTGGAGGAAAAAGCCATTTGCGGGAGCAGAGCCTTCAATAAACAAAAGTGCAAGGGAAGTGGAATTGTTTTTGGGAAACGTTAGTTTTAGCTTCGGCAATTCTTTGACAAATTTGAAAAGGAAGGACACTTAAAGTCCTTTAAAAAACGAAGAAATTTCTAGAAATATTTGCATTAAAACTCATCTTGTTTTGACATAAAGCGGAAGAAAAACCTTGAAAGTCATCCCTTGAACTTGGAAAGTAATTTTGTTGCCAAAACTCAGGAATCTGCACTCATGCCATGGGCGAAATAATAAACTTGACTTTTatgaaaaaagttggaaaattaaaaaaaacaactgctTCTTTTATTCGGATAGGTCCTTTTAGGATTCAGTGGTATCGTCTCTACCTGATTTACTTTCAATTGTGTCTGGTTCTATTTTTTCTTCCAGTTGTGCAAGTAGTTGTTGTAAAATCTGAACTCCTTTTTTTCTCTCCACTCGAACATTTTCATCTTGATTGGCCTCAACAGCGTCCAGTTCTATCAAACAACGGGTGAGAACTTCTTCCAGAATCAAATATTCCTTGGTTTTGATGCTCTCACTGAAAGCATCGACTTCTCTCGCTAGATCATCAGCTTTCTTAAGAATGCCTCCAATTTGTAACAGCTTTTTCTCGCTTTCTTGTTGCCCAGTTTCTGACGCCTTAGGGGGTAAGTGCGGAATTTCAAACGGCTCAGGTTGGTCCTCGATGGTTCTTTGACCTTGAACGATATTGCTTTCTTCGGGATGTAAATGAGCCTGATATTCTTCCCTTTTGTCATTTATCTCTTCATTTATGCGTTCTTGAACACCTCCGTTATCACGTTCGATGCTCACATGAATCTCTTCATCATAGGAACTTTTTGGTTCAACGAGCTCACTCTCACAATCTGAAAATTGCTCGGAAGGTTGCGGCTCTTGGTGACTACCCGTTTCTTTCAGACTGTGACTTTCGCAGAAATGACTCCCCTCTATTTCAAGAGTTCCATCTTTTCTTCCGTCGGATTCAACATAAATTGGTATATCAAAGGAAGTGTCATTTCTGTCTGTAATACCGGATGCGTTTAAGGTCCGTCGTGTCGGCGCCAAATGGCTTTCCCCTGAGCTTTCGGGTCCATAAGTATTCCTTCTTCCCAGTTTGATCGGGCGACTGGGAACTGACGAGGTATAATGCTCTTCAAACACCCTGACTAAATCCCCAACAACAGGATTTTCCTGGAAGAAATGTCTTCTTTGTTCCCTTTCTTCGGATTTATTTAACTGTTCATCAGTTGTATCTCCATTGTACCCCTGTTCCTTCAGAAGATCTGTCGATAAGGTCAAAACTTTTCctgaaaatttgtcattttcactCATTTCTCTTTCATTTAAGCCTTGTCTGGATATTTCAGCTGAGTTTCCTTCTACATCATCTCCTTCTCTTTCTTTTGGATTTAACGTTTCTAAGAAGATGCTCGGTTCACAGGGCAAACTGTAAGATCGAGTGCCGATCCGAGGGCCGCGGGATTTTCCTTGTTCCTCCTTTGTTCTCATCACGCTTCGCCATCTAAATTCTGGATCAACGTTTATCGGAATTTCTCTGCTCATTGCCATCTTTATCCTGAATCCACGAAAAGAAATTTTAAGGTCAAACGTTCCTTTGAGATTATGAGATGAACTATTAAAAGATAATTCTTCTAATTGAGCTTGAGATAAACCTTTTAATGATATTGGCCTAATAACATTGCGCATCATCACGGTAGTCAATATGACCTTGGAAGACACCAAACAGGAAACTATTTATCTACTACTTCGAGCttgaaattaatttcttttgtaaaTCTTGCTAAAATTTGCAACATAAATCATATAGTTAGTCCGTCCGGCAATTTTCCTCGTAAGGGCCGGGTCATCCAGGTTTCACAGACTGACAAAAGTTACCTCATAATGAACAATGAATCTCTCATCAAACATGCACCGTATGACACCCGTATTCTCAGTTTTGATAGTTTAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04051 all species →	TRAPP	Transport protein particle (TRAPP) component	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016721 all species →	Family	Bet3 family	Interproscan
IPR024096 all species →	Homologous_superfamily	NO signalling/Golgi transport ligand-binding domain superfamily	Interproscan
IPR007194 all species →	Family	Transport protein particle (TRAPP) component	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13048 all species →	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0006891 all species →	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0030008 all species →	Cellular Component	TRAPP complex	Interproscan
GO:0033106 all species →	Cellular Component	cis-Golgi network membrane	Interproscan
GO:0048193 all species →	Biological Process	Golgi vesicle transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20302	TRAPPC3, BET3; trafficking protein particle complex subunit 3	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.