Detailed information of KAM7440127.1 in Porites harrisoni

Genomic Location: Scaffold0146:351530...371349
NR annotation: no NCBI-NR hit recorded
Species Porites harrisoni · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004069 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00530
all species →
SRCRScavenger receptor cysteine-rich domainDomainInterproscan
PF00629
all species →
MAMMAM domain, meprin/A5/muDomainInterproscan
PF13895
all species →
Ig_2Immunoglobulin domainDomainInterproscan
PF00089
all species →
TrypsinTrypsinDomainInterproscan
PF13927
all species →
Ig_3Immunoglobulin domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001190
all species →
DomainSRCR domainInterproscan
IPR036179
all species →
Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR000998
all species →
DomainMAM domainInterproscan
IPR001254
all species →
DomainSerine proteases, trypsin domainInterproscan
IPR036772
all species →
Homologous_superfamilySRCR-like domain superfamilyInterproscan
IPR013783
all species →
Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR001314
all species →
FamilyPeptidase S1A, chymotrypsin familyInterproscan
IPR043504
all species →
Homologous_superfamilyPeptidase S1, PA clan, chymotrypsin-like foldInterproscan
IPR007110
all species →
DomainImmunoglobulin-like domainInterproscan
IPR013320
all species →
Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR003599
all species →
DomainImmunoglobulin subtypeInterproscan
IPR018114
all species →
Active_siteSerine proteases, trypsin family, histidine active siteInterproscan
IPR017448
all species →
DomainSRCR-like domainInterproscan
IPR050912
all species →
FamilyLysyl oxidase-like proteinInterproscan
IPR009003
all species →
Homologous_superfamilyPeptidase S1, PA clanInterproscan
IPR033116
all species →
Active_siteSerine proteases, trypsin family, serine active siteInterproscan
IPR003598
all species →
DomainImmunoglobulin subtype 2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45817
all species →
LYSYL OXIDASE-LIKE-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0004252
all species →
Molecular Functionserine-type endopeptidase activityInterproscan
GO:0006508
all species →
Biological ProcessproteolysisInterproscan
GO:0004720
all species →
Molecular Functionprotein-lysine 6-oxidase activityInterproscan
GO:0005615
all species →
Cellular Componentextracellular spaceInterproscan
GO:0018057
all species →
Biological Processpeptidyl-lysine oxidationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K13912DMBT1; deleted in malignant brain tumors 1 protein-Salivary secretionko04970deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Porites harrisoni tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Porites harrisoni, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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