Gene detail

Detailed information of KAM7440468.1 in Porites harrisoni

Genomic Location: Scaffold0140:62931...80424
NR annotation: no NCBI-NR hit recorded
Species abbreviation PHARR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-g10558.t1

ATTTGTTATTGATATGTGATGATAGTTATTTGGTTCACTGCTAATGTGCCATCCTTTCTTACGGTTCTTTCGTCAAAATGAGAATCAATATTTCGACCGGTAGATTGTGATAGGTATTACTCTCTTTCGGTGCAAAATGGAGTCAGAAAACGGAGTCAGTACCGACAATTTCACCGCTTCCGCGGTAAAAGCGAACGAACAAGCGATAGAGTATATTTCAAGCATAGAAACAGATGATGAAATATGGGAATCACTTTTATTTGCGGACTCATTGGTTACCACCTCTCAAACTGGCAGGgaaatagGTGAAATGACAGTAACAGTGGAAAATGCCACTTGGAGAGGAAAGCCATGCTATCTTGTTCATGCTAATAGCCATGGAAGTGTTGATCAAGTACCTATAGGCACATCTGTCACAGCTTATGTTGGAAGAACACTTCAGACATTCGAACAAACTCACTATGAATATGTCAAGATACCAGATAACCCACTAGATAAGAAAACTCTGATAGAACTTGACGAGGATGGTACATATTCTGTGAAAAAGACTATTTCACAGGGAGAGGAAATGCAAAGAACCGATACATATTACAAAAAGGACCAGTTTCAGGGCTTCATATCTGAAGggTCAAATCTTTTGCTGCAAAGAATCATGGCCAAGAAAGGTGTTCCATCCGATCTGACATTTGTTGCTTTTGACTCAACAACCAGTCTTTGTACATCATCGTATAAAATGCTTGGTAAATCTAGTCGGAAGGTTGGCGGACAGCACGTAACTGTAACAGGACTTCAAAGAACAATTCACTCAATACAGGAGTCTCCTACAACCTGGGAGTCTTATTTCTTATCCACTGGGCATTTGGCAAGTAGAACACAGCTTGGATCGCAAGTTACAATGACCCTGCTAAGATTACCAGAGGAACATCAAAATGAAGAGTCTGAAGTGTCAGAGGAGACACCAGTAGTCAAACCACTGAGATGGGAGGAAGACATGCAGTTGTTTTCACGTTTTTTAGATCGAAAGGCGGAGTTGGCTGACGATCATGCTACTTACATGAGAAGGCACCCCGAACTACGTGCCCTACTTGCCGACTTTCTTCAGTTTCTGCTTCTCAGGAAACCTGATGACGTCACCGGCTTCGCCTCCGAGTTTTTTGCAGCTTTTTCCACGGCTGCGCCGTCTGCACCCTCATTTGCACGTTCGTCTCCAAGTCCTGCGCGGCCATCCTCTTCGCCTTAGCGGGTGTTTTATGCCATAAACCTCCATGTCGTGTTTAAAATATACTTTTCGAAATGATAATTATTTGTACAGAAGAATGAAAGTGTAAGAATGAAATCTGTTATATTTCCCGCTGTTTTGAAGACCTGGATGTGTTTGGGTACACTGTGTACAGTCTCGCTCTGTTGAGGCAAATTTAAGAACCCAGGGCCATCACTTATACAGTTCAAGGGAAAACTAAAGCGTTGGGATCTCTCATCATCTCTTGAATGTTTTCGATCGTGacactaaaaaaaatattgcttcAAGGCGAATTGAAACTACTTTCACATTCAAAATCAGCTGAAGCTGAGACAAGTATATTACGGTTGTGTCTTCTGTCAGTCTCTATGTTGAATTTTGTGAAAGCTTCGGACTGAGTAGTTCTTCAGATCTCCAGTTTTTTCCTTGCCGTTCACAATGTACTTCTATAAATTTCAAATTACATATATGAAACAAAACCTGATGGAATCTTTCAAATTATCTATCATTTGTGTGCACATTGTGATATAttcaaggaatttttgggtgTATAGTTTTTAGTATTATGTCTGTGAAGAGATCAGCAAGTCTTGTTGCTTTTAAATCTTTTGAACCGCTAAATTTTCCTCTGTTTGCGTTAGTTTCTTTATCAACTTCTTTTATTGGCCACTGACGAGTGCCAGAAACGGTGACGTTACTGTAGGTGATTTACGTCAACGAACTCTGTGAATGAACCCAAATTTTGGTCTTCCAGTAACAGTAAACACACGGAATCTTACTTTTACAGATATTTCTGTTctctttctctatttttctttcgtTACTCAACTCTATTCTGTTGTCTATATAAGATGCGTCAAAGGAGACGATAACTCGGTGTAAAACTGAATGCAAAATACCTAGTATCACGTTCATAAACGTTTATTTAACTCTCCCTGGCGTCCCATGTCAGGTAATCCGGGAAATTTGTGGAACTCGGAATCCTGAGGTGTGGAATTCGTAAtccagctcaaggaatccggaatccgaaTCCAGTACCTAGatccggaatccatggcgtggaatccagaatccaagattaCCTTCCACGGGACGACTCCTTAAATCTATTCTGATACTGTTTGAATTGCTTGTTGATTGCTGTCGGTTAAGCAGTATTAAGCGTGAAACAATAAAGATGTTTTTGGACTA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21772 all species →	CATIP_N	Ciliogenesis-associated TTC17-interacting protein, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047501 all species →	Domain	Ciliogenesis-associated TTC17-interacting protein, dimerization/docking domain	Interproscan
IPR048777 all species →	Domain	Ciliogenesis-associated TTC17-interacting protein, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15505 all species →	RIIA DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030041 all species →	Biological Process	actin filament polymerization	Interproscan
GO:0044782 all species →	Biological Process	cilium organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25788	CATIP; ciliogenesis-associated TTC17-interacting protein	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.