Gene detail

Detailed information of KAM7441819.1 in Porites harrisoni

Genomic Location: Scaffold0114:161308...200508
NR annotation: no NCBI-NR hit recorded
Species Porites harrisoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-g9387.t1

GAAGACTGGAACTGAAATAAAACCAATATGGCCGACGAAGTtgatttggaaaaatttattataaaaaaggctcCACCGAAAGCGTTCTACATTCCCGATTTCATTTCAATCGAAGAAGAAAGTTATCTCCTAGATCACGTTTATGGAGCTCCTAAGCCAAAGTAGACAAAACTTTCAGGAAGGCGACTTCAAAATTGGGGTGGCTTACCACATGCCAAGGGAATGGTTCTTGAAAAACTTCCACAatggcTACAGAAATACTCTGCCAAGGTTGGGGCTCTTTCAGTATTCAGCGATGTTGCTCCAAATCATGTATTAGTAAATGAGTATGAACCAGGTCAAGGAATAATGCCTCATACAGATGGACCATTATTTTATCCAGTGGTTTCCACGATTAATCTTGGTTCTCACACCTTTCTGGACTTCTACCATCCTTTAACCAAGACAGGTCATGACTCCAAGGACAATTCGGAAGAGTCAGCGTTGAGTTTGGAGGATCGTTATTTCATGTCTGTGCTACTGGAACCCAGAAGTTTGTTCCTCTTAACAGAAGATCTTTATCATAATTTCTTGCACGGTATCGCCGAGAGGACTAGTGATGAAGTGATTGATCGCGTGGCAAATCTGGACACTTGTCACGCTTCGGTAGGTGACATATTGCTTCGAAAGACAAGGATTTCGCTCACTATCAGAAATGTGCCAAAGATTCTGAAGTTTAAGCTTAATCTGGGAAGATAAGGCGGATTATGGAATTTAAATTTGCCTTCATTGAAAGGTCACAGCCTTCTTGCTACAATGGGTACCCCGTGAGCAGCGACAGTTCATCTAAGTGATGGATACAATGGAAAGCCTCTCTCCTCCAAAGAGACTCCCGCTGCGTATTGCAGCGAGAATAGAAATAATTGAAAAACAATAAGGGCGGGGTCCGTCTTTTTTCTCTTCCCATCAAACCTTGCGCGCTTTTTGTTTCCTCTCCCCAACCTCCCTACGAAGGCTACGACACAAAGAAGCCTGTGCGGAGGATAGAAATGGAACCCTCAACGCCAATGGTCCTTCCTGTTACAGGAAAGTAGGGTAATAAGGTCTGATGTAGAGTGTCACGATGGAACTCCAGCTAAGTGTTAATCAAAGAAATGGTCACACATAAAAGGAGAAGAGATCTAGATCTTTGATAACAGCCTGTTCCATGACCAGGCGTTCAGGTGGTGGGAGAGTCGAATAGCGTACcaacgcagacgtatttccggtggTTGACGACCGGAAATACATCTGCTTTCGCAGCGTTAGAGTCGCGTAATGCGAAGAAAAAGATGACTATTTTTTTTCATCGCACCGCTTAACTTTGCGCTGCTACGCCGCTGTCTGAACGCTTAGAACAAGGTAAATAATCTATTCTCTCTTGAGGGCGTAGAATGGTTTAAGATCTGGTGAAATGCCCACTTAGAAGTAAGTTGAGCTAAGTACATACCGTAGTCGAAACGTCGCGATCTTTTAGTGAGTAAATGAAAAATTTAGTTTATTTATCAGTCGTCAGTACGCTCTAGTTATGGAGTTTGAAAGCGTCGTTGTAGAGGGAAAAAACCGAGAAAACAGGAATAGAACCAACAACAAAGAGTGCTTTCGCCTCTTAAACTAGATTGTAATTTGCCGTTTATACTATTTTTTTGTCTGTATTATTTCCAATTTTAACTTTCTCGCGCTCGACTAAAAAAAAGTCTGTAATGGGGACTTAAACTCTAATTAAAACCAAGGTAAAATGCTTGGCTCGGCCATTGTCCTGTACGGCCCCCagataaaacagaatttttcagcatcttttcctttcctttgttTACTTGTTTATGTGTTTGTTTATTAACCAATAACGTACCGTCAAAGTCAAGTTGTCAACCACGACACTGCATGATTAAGTATTACGTAGTAAGCCCGCTAACCCAGTTTCAAACTGAAATTTCCTTATGGTAATTTTAGTTCATGTGTACTTGGCGTAGACGAATTGCTTTCATTTTCGAGTTTTCGAGCCATTATAAGGAGACTAATCGTTTTCATTTATTAGTCACTTAAACAACAGCAGCTTAGAAAGCAACATTTCGCCACCTCGGGTAAAGTTAGTGCATGGCGACTTGTTGGTTTGTCTTCGTATCTCATCTTTTCCTACTGTTGAGCGTAAAAACAGGTTAGTCAGCAGTTGAACGTATCTCAGCATAGCTTAAGCACATTCTAACGTCGCTAGCCCTTTGTCAGGGCGAATCCGCTCTGACCTCTGCTTTCGAATCTCCTTGCGGTGGCCACTTTATACTCACTCGTTCAAATCAAACCCAtttgtttttgtgtgtgtgtgtgtgtgtttttttttttcaaaaccagatAGCGCAGTTCAATTTCATTGCTCGCACTATGTGTAGAATGATAACTATGTTGGCACGATTTGAGCTCTGGAAGTAAACCATCGAGGCACTCAAATTCGAAATATTTTTCGAAACCACAATTATTTGCAGTCGGATATAATTACAATTTTCGTCTTAGTTGTGGCAGCTTGAATCCGAACCTTCAGCTGTAGACTCTTGCGAGGAAACTAATATTCTACACATTGTATGGATAAATGTAAATTGAACTGTGCTGTTTAAAGGACACTGAAAAGTCTGGTTTTATTTAATGagttaatagagacctttagactcgaggacgagatttaacttgaagtttttttcgtatattctcaaaaaatagacattCCAGGAAGCTTCATTTTACTCTTTTTACAAGAAAAGTTAACAAGGTTATTTTTTTGAAGGAAGTTAAGCCCTCTCAAGATCGCAAAGTGATAAAATTTCCATGACA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13532 all species →	2OG-FeII_Oxy_2	2OG-Fe(II) oxygenase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032862 all species →	Family	Alpha-ketoglutarate-dependent dioxygenase alkB homologue 6	Interproscan
IPR005123 all species →	Domain	Oxoglutarate/iron-dependent dioxygenase	Interproscan
IPR027450 all species →	Domain	Alpha-ketoglutarate-dependent dioxygenase AlkB-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46030 all species →	ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB HOMOLOG 6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10768	ALKBH6; alkylated DNA repair protein alkB homolog 6	EC:1.14.11.-	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.