Gene detail

Detailed information of KAM7442761.1 in Porites harrisoni

Genomic Location: Scaffold0095:960542...975439
NR annotation: no NCBI-NR hit recorded
Species Porites harrisoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ABFA07_008401

ATGGCGAAGAGTAAGCGGCATGGCGGTCAGCAGAAGAGATCGAAAAAGAGTGTGAACAAAGCAAAGAGCAGCAAGAAACGACATTTTAAGGAGCTCAAAGAGAAGCATTCTGTGGATGAGGATGACAAAAAAGCAATAAAGAGACTGAAACAGGAACATAGTATCACTAAGCATCATGAAACAGACAGTTCAGACAGCGAGGATGGTCCAGCTCCTTATCAACAGTTGCTTGGTTTGCTTGGAGTTGAGTCTGGATCTGACGTGAACCACTTGACAAAAAAATGGAGAGAGGATGGTAGTGAAGGAGAAGAAGAGGAGGAAAATGATGAGGAAATTGAACATGATGCTGAGTTCAAGGATGAAAATAAAAATGACAAGGCCATAAAACAAATGAATGATAACAAAATGACGATAATAAAACAGAACAAAGATAAGAGTCACAGTGATGTGGTGCATGTTGGAAGTTCTAATGAAGATAGAAAAGAAACTGTTATCCACGAAAACAGCTATAATGGCAATGAAGATGGTGATGACACTAGTGATAATAATGACGACGATGATGATGATGTCATTGACAGAAATAAAACTGATACTGATGACTATCGGAAAGAAAGTGGAACCTTTGAGGAAAGTGATGATGACAGTATTGATGATGTCAAAACAAGGCATTTGAAAGGAACTGAAGATCCATTTGTAGTTCATTTTGAACAAGACCTAGAAGAATCTGCAGAAAAACATCTTAATGACCTCAAGTCCTGGCAAGTTAAAACCAGCAAAATTGCTTCATTTGGCAGTGTCACTGAAGTGATTCCATCTGTCAAGTCTTTACCAAGTGTACACATTTATGTCAATAAGGAAACAACATTTACAGATTTGAAGCTGAGAGCTAGTCTTCTTCAAGGTTGGGAAAAAATCAATGAAAACTTAAACTTTGAAGGTTTGTTCACTCCACTTCAACAAAATCTTTTTCAGCACATAAACTCATACCAGGGTCAAGTTAAGAATAAAACGCGTTTCTTTGAAGAGTATAGGGAGGAAGAGGAATCTGACATTTCTAAAGACAACAAAACTGAAGACTTTAAACAGATGTTTGCAGGAAACATTGATGATTGTTTCCGGATAGGAATATCAGCCAGTAAAAAGTCTCTAGAATTATATGCAAAGTTTTATTCTTCAGATATTATTGTGGCTTCACCTCTTGGACTAAGGACCATCATAGGAAATGAAGGGGAGAAGTCCCATGAGTATGATTTTCTTTCGTCCATTGAAGTTATTATATTGGATCAAACGGATGTCTTTCTCATGCAGAACTGGGAACATGTTCAGCACATATTTCAGCATCTTCATCTACAACCAAAAGACTCACATGATGTAGATTTTTCACGTGTCAGAATGTGGTGCCTAAATGGTTGGTCTAAGTTTTACAGACAGACCTTAATCTTCAGCAGCTTTGTTTCCCCAGAAATGAACTCATTATTCAACAGACATTGTTACAATATCCTTTTTAAAGTGAAAGCTAGTCCCTCTGATGTACCAGGCTCTATTTGTCAAGTTGCTGTTCAGGTTCCACAGGCTTTTCACCGATTTCAATGTTCCAGTTTTGCTGAGGCAGCTGATAAAAGATTTAATACTTTCATAAATGAGGTTTTACCAGAGTTCAAAGGCTCTCTCATGGGTCACACGGCCATATTTGTTCCATCATACTTTGACTTTGTCCGGCTCAGAAACTACTTCAAACGAGAAGGCATTGAATGTGCTCAAATATCTGAATATTCGCAGAAGAAGGACATACAGAGGGCTAGAACATATTTCCTGCAGGGAAAAAGGCCATTTCTCTTGTTCACGGAAAGATTTTATTTCTTCTACAGATATCGAATCAAAGGAATTAAAAACATCATCTTCTACGAACTGCCACTCTACTCTACCTTCTACTCTGAAATTCTAAACCACATGGACACTTGGCATAGCCATTCGGACTCCCAGGTTAATCCTGTCACATGTACAGTGCTGTATACAAAGTCAAATGCCTTGCGGTTAGCGGGTGTGGTCGGTGCAAATCGCTGTGCTCACATGATCTCATCAGACCAACAGGTGCACATGTTTGTGACTGGGGATGATGAATCATAA

Transcript

rna-g8623.t2

ATGGCGAAGAGTAAGCGGCATGGCGGTCAGCAGAAGAGATCGAAAAAGAGTGTGAACAAAGCAAAGAGCAGCAAGAAACGACATTTTAAGGAGCTCAAAGAGAAGCATTCTGTGGATGAGGAtgacaaaaaagcaataaagaGACTGAAACAGGAACATAGTATCACTAAGCATCATGAAACAGACAGTTCAGACAGCGAGGATGGTCCAGCTCCTTATCAACAGTTGCTTGGTTTGCTTGGAGTTGAGTCTGGATCTGACGTGAACCACTTGACAAaaaaatggagagaggatggtagtgaaggagaagaagaggaggaaaaTGATGAGGAAATTGAACATGATGCTGAGTTCAaggatgaaaataaaaatgacaagGCCATAAAACAAATGAATGATAACAAAATGACGATAATAAAACAGAACAAAGATAAGAGTCACAGTGATGTGGTGCATGTTGGAAGTTCTAATgaagatagaaaagaaactgtTATCCACGAAAACAGCTATAATGGCAATGAAGATGGTGATGACACTAGTGATAAtaatgacgacgatgatgatgatgtcattGACAGAAATAAAACTGATACTGATGACTATCGGAAAGAAAGTGGAACCTTTGAGGAAAGTGATGATGACAGTATTGATGATGTCAAAACAAGGCATTTGAAAGgAACTGAAGATCCATTTGTAGTTCATTTTGAACAAGACCTAGAAGAATCTGCAGAAAAACATCTTAATGACCTCAAGTCCTGGCAAGTTAAAACCAGCAAAATTGCTTCATTTGGCAGTGTCACTGAAGTGATTCCATCTGTCAAGTCTTTACCAAGTGTACACATTTATGTCAATAAGGAAACAACATTTACAGATTTGAAGcTGAGAGCTAGTCTTCTTCAAGGTTGGgaaaaaatcaatgaaaacttAAACTTTGAAGGTTTGTTcactccacttcaacaaaatcTTTTTCAGCACATAAACTCATACCAGGGTCAAGTTAAGAATAAAACGCGTTTCTTTGAAGAGTATAGGGAGGAAGAGGAATCTGACATTTCTAAAGACAACAAAACTGAAGACTTTAAACAGATGTTTGCAGGAAACATTGATGATTGTTTCCGGATAGGAATATCAGCCAGTAAAAAGTCTCTAGAATTATATGCAAAGTTTTATTCTTCAGATATTATTGTGGCTTCACCTCTTGGACTAAGGACCATCATAGGAAATGAaggGGAGAAGTCCCATGAGTATGATTTTCTTTCGTCCATTGAAGTTATTATATTGGATCAAACGGATGTCTTTCTCATGCAGAACTGGGAACATGTTCAGCACATATTTCAGCATCTTCATCTACAACCAAAAGACTCACATGATGTAGATTTTTCACGTGTCAGAATGTGGTGCCTAAATGGTTGgtctAAGTTTTACAGACAGACCTTAATCTTCAGCAGCTTTGTTTCCCCAGAAATGAACTCATTATTCAACAGACATTGTTACAATATCCTTTTTAAAGTGAAAGCTAGTCCCTCTGATGTACCAGGCTCTATTTGTCAAGTTGCTGTTCAGGTTCCACAGGCTTTTCACCGATTTCAATGTTCCAGTTTTGCTGAGGCAGCTGATAAAAGATTTAATACTTTCATAAATGAGGTTTTACCAGAGTTCAAAGGCTCTCTCATGGGTCACACGGCCATATTTGTTCCATCATACTTTGACTTTGTCCGGCTCAGAAACTACTTCAAACGAGAAGGCATTGAATGTGCTCAAATATCTGAATATTCGCAGAAGAAGGACATACAGAGGGCTAGAACATATTTCCTGCAGGGAAAAAGGCCATTTCTCTTGTTCACGGAAAGATTTTATTTCTTCTACAGatATCGAATCAAAGGAATTAAAAACATCATCTTCTACGAACTGCCACTCTACTCTACCTTCTACTCTGAAATTCTAAACCACATGGACACTTGGCATAGCCATTCGGACTCCCAGGTTAATCCTGTCACATGTACAGTGCTGTATACAAAGTCAAATGCCTTGCGGTTAGCGGGTGTGGTCGGTGCAAATCGCTGTGCTCACATGATCTCATCAGACCAACAGGTGCACATGTTTGTGACTGGGGATGATGAATCATAAGATTTGCACAATTGGTGAGTGGGTGTGGTCAGTACAAATGCCTTGTGATTAGCGAGTTTGGTCGGTACAAATTGCTGTGCTCACATGATCTCATCAGACCAACAGGTGCACATGTTTGTGACTGGAGATGATGAATCATAAGATATTAAATTATGTGGCTATGAATCTAGCTCTGTGCATTTggacataccgtatttattcgatttaccgccctgggcgcttattaaatttttgtaccttgagagtgggcgcttattagaggtgggcgcttattagtttattaaattttcaccattttcagcaagtgaagtatgtttattttgcaacaaaacaataaatgctaataacaaaacgcgaagaagtaacaaagcaaggtttctgtaaaatactctgaaaaAAAACTCAGTCCttggggaagtctcttattggaACTTATTCACttaagtgggtggggtgggggtgagtgcttatttgagtttgattggggtgaggagggggtgggcgcttattgggcgcttattaactttttctgcctttaggatgggcgcttattcgaggtgggcgctaattcgaggttgggcgcttattcgaataaatacggtactaatccaggatttatttatttgtcaCGGAGGGGGTCAAATAGACCCTGCTTCCATGGTTGTCTTTTGAAGTATTAAAAATGACCAGTTCGTGAATATCAATCAACACTGCTCAAAAGAATGCCTTAATATTAGAAAACTTACCAAGTCTAAACTTAAGGTGATAAGATCCAAAAGGAACAAAGACACTGCCTCATGAAGTCACAAAATTTTATAGATGTTTGTACAGTTGGGGCACAACCTTGCCCCTCACTGTAAAAATTCCACAACTTTGCAGAACTTTATcttttagttttcaacaaatcacttccAAGGGCAACTTTACACTGATTTTAAGGAATTCTTTTCTGCAGTGGTGACAGATGTTTGCTATCAGGTCCCagttaaagttgaaaaaaaaaaaatggaaagttccagcctcctcctcaggcatTTTGTTTTTCGCATGGTAAAGCCAAGCCCAAAGGGAAAGGTCTATTTTACATTATGTACAGTCCTCTACAATACAGTGCATTTATCACTCTCATGTGACTGTTTCATTATAGGACGAGTAAAATCCCACAAAATTTGTCATAGTCTTTTTTACATATTTATtgaatcttcatttaaaattaaagaatcATCTTCTCAACAAATATGTTCAGTGG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06862 all species →	UTP25	Utp25, U3 small nucleolar RNA-associated SSU processome protein 25	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010678 all species →	Family	U3 small nucleolar RNA-associated protein 25	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12933 all species →	ORF PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0034511 all species →	Molecular Function	U3 snoRNA binding	Interproscan
GO:0000462 all species →	Biological Process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0019843 all species →	Molecular Function	rRNA binding	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14774	UTP25, DEF; U3 small nucleolar RNA-associated protein 25	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.