Genomic Location: Scaffold0085:730118...740027
NR annotation: no NCBI-NR hit recorded
Species Porites harrisoni · all data for this species · gene families
| CDS |
| ABFA07_007676 |
| Transcript |
| rna-g7881.t1 |
| Protein |
| KAM7443596.1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003862 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08423 all species → | Rad51 | Rad51 | Domain | Interproscan |
| PF21794 all species → | RAD51D_N | RAD51D, N-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR016467 all species → | Family | DNA recombination and repair protein, RecA-like | Interproscan |
| IPR013632 all species → | Domain | DNA recombination and repair protein Rad51-like, C-terminal | Interproscan |
| IPR003593 all species → | Domain | AAA+ ATPase domain | Interproscan |
| IPR020588 all species → | Domain | DNA recombination and repair protein RecA-like, ATP-binding domain | Interproscan |
| IPR051988 all species → | Family | Homologous Recombination Repair RAD51 Paralog | Interproscan |
| IPR047323 all species → | Domain | DNA repair protein RAD51 homolog 4, C-terminal | Interproscan |
| IPR048943 all species → | Domain | RAD51D, N-terminal domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46457 all species → | DNA REPAIR PROTEIN RAD51 HOMOLOG 4 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016887 all species → | Molecular Function | ATP hydrolysis activity | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006281 all species → | Biological Process | DNA repair | Interproscan |
| GO:0140664 all species → | Molecular Function | ATP-dependent DNA damage sensor activity | Interproscan |
| GO:0000400 all species → | Molecular Function | four-way junction DNA binding | Interproscan |
| GO:0000723 all species → | Biological Process | telomere maintenance | Interproscan |
| GO:0000724 all species → | Biological Process | double-strand break repair via homologous recombination | Interproscan |
| GO:0003697 all species → | Molecular Function | single-stranded DNA binding | Interproscan |
| GO:0005657 all species → | Cellular Component | replication fork | Interproscan |
| GO:0005813 all species → | Cellular Component | centrosome | Interproscan |
| GO:0007131 all species → | Biological Process | reciprocal meiotic recombination | Interproscan |
| GO:0008094 all species → | Molecular Function | ATP-dependent activity, acting on DNA | Interproscan |
| GO:0033063 all species → | Cellular Component | Rad51B-Rad51C-Rad51D-XRCC2 complex | Interproscan |
| GO:0042148 all species → | Biological Process | DNA strand invasion | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10871 | RAD51L3, RAD51D; RAD51-like protein 3 | - | DNA repair and recombination proteins | ko03400 | deepkoala |
Genes whose expression across the transcriptome samples of Porites harrisoni tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Porites harrisoni, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
