Gene detail

Detailed information of KAM7444052.1 in Porites harrisoni

Genomic Location: Scaffold0080:218773...230816
NR annotation: no NCBI-NR hit recorded
Species abbreviation PHARR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-g7434.t1

ggcggattttcttgtgtttgaaaaaaattaaaacaacttcGTTTGGATCTAAATTTACACAAAGCACAAGCCGTTTATTTCCTcaccaaataaagaaaaagcgTCTCAAGAATGGATAGCCTTTATCAAGAGACAAATCGGCTGATTGTTGGAGTTCAGGGACTACTAAGCAAGTTAAGCACCACTCATCCTGATTCATTACATGCTATTGAACAGGAAATAGAGCACAACTTAGAGCAAGCTTCCGTTAACTGTGATCGACTCACAATTCTCATAAACAAGGAACCACCACAGAAAAAGCAAAGTGCTAGAATAAAAGTAGACCAACTAACATATGACTTGAGACACTTGAAAACAGGCTTTAACAATTATAAGCACCGGAAAATGATGAAGGagcaagaagaaaaagaaagggaagAGCTTCTAAACAGAAGGTTTACTGCTAATAATAGCGGTGAAACATCCATCATGATAGACCATGCACTACAGCACAACACTTCACTTCAAAATGCTGACAGAGGAATCAGTGATTTACTAAGCAGTGGatcaagtattttaaaaagtttgagAGATCAGCGAGTGACATTAAAAGGAGCTCATAAGAGAATTCTGGATATTGCTAGCACTCTGGGTCTTTCCAACACTGTTATGAGATTAATTGACAAGAGAGCGACACAGgaCAAATGGATTGTGTTTGGTGGGATGATAGTAACATGTATAATTATATTCTTTGTAGTCAAGTACCTTACGTGATGTCCATTTTTAAAACTTAAGTTGCTATGAACTCTCTCAGGGTCCATTTATTTGAccatacagtcaactctctcttagacggacacctttgggatcCACACCCTGAGTCTGTCTTAGAGatatgtccgtcttatagagagtcaactaaaagAAGTAAAGAAAGTCAGGGACCAACTCTTAGGTGTCCCTTGTAGTGAGGTGTCCATCTCATAGAAGTGTCCATTAAGCGATCGAGAGTTGAccatacagtcaactccctcttAGATGGACACCTTTGGCACCAGCACTATGTGTCCGTCtaagagagatgtccgtcttatagagagtcaactaaaagaagtaaagaaaggcagggaccaactcttgGTGTCCGTTTTAGTGAAGTGTCTATCTTATAGAATTGTCCGTTAAGACAGGATTGACTGTATAAACAACTCcttctaagatggacacctttgggactggcACTGTATGTCCGTCTAATAGGGAGTCaactaaaaggagtaaagaaaggcagaaACCAACTCTAGGTGGCCGTTTTAGTgcggtgtctgtcttatagagatGTCGATTGAGAGCGAGTTGACTGTATTCcattgagaaagaaaaaaagaaatatcagCATACAGTGCTGATTAAATGTAACATCTACAGCTGAGCTGACATGCAATGTTAATCTGCTTCTGTAAAGAAATCAGTAAGAATCTAGAGAAACAAAATTACAAAGTTACTAGTTCCCTGAAGGACCAGTCATTTACTGATTTGCTTTATGGCCCATGAAGGAAAACTTTTACTTTTATGATAATTTATAGCCTGTGTACTTACCCTTCTTTTTCGTTTCCTCGGATCAGGGAGAGAGATGCCTGTGTTGCTCTAGTGTTCTGGTTTCTCTGGAACGTTGGGGAAAGCCTGATAGCAACTGGTTTCCCTACTTGTCGAATTCGCTCTGTCCCAGTTCGCAACAAATTCGCCATCTGTTACTTTCTGTAAACCATTGAAAATATTCCCTTTAATCGctctagaaaaaaaatctttcaataTACTTCTCCTTCTTTTAAACTTGCTCCTCTGGAACTCTAACGTAGCGAATTTGACAAGCAGCGAAACCGTTGTAAAGCGAAAGCCTCTCTTCCCGGTTTCgtttgaggggaggggtggCTATACACAGGCTTTTAGCCAAGCGGGAGAAGCGAAGGAGATGCGCGAGAAGGGAACCAAAAGAATTgaagtgtgtgtgtgtgtgtgtgtgtgtgtggggggggggggggggggggtcatttTCTTCCCCTGCCGTTCCCCCatcccttgtttttttttctgcccttGTGCTTCTCCCGTGGTTCTCCCGCTCGCATAGAAGGAAACGAAAACAAATGCTACCCAGGTTTACAAATTTATGAAAGTAAATCCTGTATACGGTTAACAGGACGCCGTTACCGTCTGACGTCAGAGATTATGCAATCCTGCCAGCATTTTCCTCCAGCATGGagacttttggcgggaaaatggtATTATTGTTTCCTGTCATGTGTCCACGAAGTAACCACAATGATTGAAGTAACCAACATAAGTGTGTGCTGCCACAGAAAAATCCCAGAGATACAACAATCACTGATGTAGGCTTAACTGTAGAATACCCGGCCACTTCGAAGCTATACCACTAAAACAGTGGCTATGTGGCTACGCGGCCACGTGGCTACGTAGCCATGTAGTGGCGTAGCCCCGTAGCCACGACACATGACGATATAACAAGGAGATTTACAGttacgtttacggcaaacggcaaacgtcaatttgtaccacgtgattAAAGTTCCTCTTTACTTGtattttactgttcattaattctccaggaaaaaaaatagtattttcTCGTTAGTTTTTTCGTTAAGAATCgtttggactgtttttatctgcttattttatattttgagaaattctcaagtTGAATCTGACCTCGTTCTTTTAGCCATGAGCGCGCGTAGCCACTACAAATGCAATATACCTGGTTCTTTAAGCCGTGAGTCTCGCAGCCACGTAGCCACTGTTCTAGGATTGTAGCTTTGAAGTGGtcgggtattctgcagttactcCCAGATGTACTCTAAGTAGAATTTCCTGAGTGACTCAAAAACCCTTCTAAGCTTTACGATTTGTTGCCAAAAAATGCAGtgtcttttatttctttcttataaCTGGAATACAGGCGATCAAATGCATTCAATCCGTGCTTGTTTaatgtattattttattaaatgaCATTGATTAAAATacctttt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12352 all species →	V-SNARE_C	Snare region anchored in the vesicle membrane C-terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027027 all species →	Family	GOSR2/Membrin/Bos1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21230 all species →	VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005484 all species →	Molecular Function	SNAP receptor activity	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0000149 all species →	Molecular Function	SNARE binding	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0006906 all species →	Biological Process	vesicle fusion	Interproscan
GO:0012507 all species →	Cellular Component	ER to Golgi transport vesicle membrane	Interproscan
GO:0031201 all species →	Cellular Component	SNARE complex	Interproscan
GO:0031902 all species →	Cellular Component	late endosome membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08496	GOSR2, BOS1; golgi SNAP receptor complex member 2	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.