Gene detail

Detailed information of KAM7444752.1 in Porites harrisoni

Genomic Location: Scaffold0071:338616...347139
NR annotation: no NCBI-NR hit recorded
Species abbreviation PHARR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-g6840.t1

CTCAAACCTTGACATATTCCTTACATGAGGCTTTTAGTCGCTAAATGCAAAACCCGCTGATTAGGACCCAGATTCCTTCGTTTAATCACTCGTTCAACATGGCCGACTCAAAGAAAGAAACGAAGACAAAAACTACTCCAGGTGTAGTGTATTTGAGTCGATTGCCTCCATTTATGAAGCCAGCTAAAATAAGGAACATATTTTCACAATACGGGGAAGTTGGAAGGCTATTTTTGCAACCAGAAGATGTTGctgtgaggaaaaaaagaaaaaaacatggtGGAAGTGGGCGAAAACTATTTATTGAAGGATGGATTGAATTTAAGGACAAGCGGGTTGCAAAAGCTGTGGCCTTGAGCTTAAACAACACGACGATTGGAGGAAAAAAAGGGGGATACTACCATGATGATATCTGGAATATAAAATATCTTCCAAAATTCCTTTGGGGTCACTTGAGTGAAAAGATTGCATATGAAAAAGCCACAAAAGAACAGAGAATGAGAACTGAAATTTCCCAAGCCAAAAGAGAGGCCAATTTCTATATTCAGAATGTGGAGAAAGGAAAAGCTATAGATGCCATAGAGACAAGAAAGAGGAAGAGGGATGATCAGACACCAGTGGAGAAAAGATTAAGAACTTTCAATCAGCATCAGCccttaaaaaataacaaaacagaagAGAGTAAACACGCAGAAACTGATTCTACTGAAAATGAAGCTGGGAAATCACTTAGTAAAAATCTGCTGAAAAAGGTATTTTCTTCGAGAGGTCAAAGATGACAGTGAATAAAGGGATGCATCTCATTCTAGTTCCTCGTCGAAGCAAGCACAGGTCAACCAAGTTGATCACAGTTGATACCGACAAAATTGTCGCTTTTCAATTGGCAGAATAACTAGTAAGGGTAAATTCTAGGAAATTATGACATCACCAGCGACAAAGTAGAAAACAAATTGTAGGAAGCTTTAATTTCACGGTGTGGTCACTGGTGGATGGTCGCACAACTCGTCCACATTCTTGTCGAACAAATTTATCTCCCTCAAGTTTAAATCCGTAAGAGAAATTGAATGCCACACAGTCGTTTCCTTGTCTTTTTTCGCAATTTCTGATCcaatttttatagaaaaatgcATATGAATGAGGTAACAAGCGTCTCCCTGTGACCAAATGGAAGTTTTTAATGTTCTTCACAAAAGGAAATAATCATTTAGACTTTGACAGTTTCAAAAAAAGGCCATTAAACACACCTGGTACCCCCCTCGGTTCCACCTTGGTTAACATGAAATTGACTAAAAAGAGAAGGCAGCAAAGGCGGGGTTTTCATGGTAAACAATGTCAGACAATGCTATATGCATTTCTTGCATAACGAATTCGGGCTTATCTCATAAAGGATTATAATGCAATTAGTGTTCATTGATATTTGTTGTTTTCTCACAGTTGATTTTTACACTTAGTTCAGTACGATAACATTTTAACATTGACTTGGTAAAACAGTTTTGCAATAAGCTTGCCAGCttttactctctttttttaattctgCTATATGTCCCCCAGTTGGCTGAATTTAAAAGACCGTGTAACAGAGTTTGAACTTAATTTTTGAGGACCaattgtaaaaaagcaaatCCTATCATTAATCAGTAGAGGATACTGTAGGAGCAACAATGCTACATGTGTCGTCGGACTCGATAATCAAGCCATTAAAAACTACGGAATATAACTAACAGCTGGATTCCCTTTAGTTATAAACAACTGTAGTTTAATTGTTTTTAGATACAATCAAAACCTTAAAGAATTGTGATTAATGCTGATTTCAACGTGACGATAAAGCCAGTTATGTGCCTAAGGGCGTCTCCGCCTCTGATTTTGGAATTGCATATAAACAATAGCCTGTCTTGCGTTATAAGTCTTACTGTGTTACCTTAGTAGCAGTTATAAAACAGAACTATGTCCTAAATCAGAATTGAATGATCATGACTGTGGGAAAAATCACGCtccaaaaaaaagaacattgaaaTGTTGATATGAGATATTATAACAGATAGCACAAACTTATTTAATTTAACTATTTACAGCGGTCTTACCCAAGCGCGTATAAGAGGGATCGCACAAATGCATTCATTACCATTTCGATAGAAGTTTCGACAACTAACGGTTATGGCTGCTCCAGCTGCTAACGAAGCCCAGCTCCCAAGAACTCAGGTAACTCGtgt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR039119 all species →	Family	ABT1/Esf2	Interproscan
IPR034353 all species →	Domain	ABT1/ESF2, RNA recognition motif	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12311 all species →	ACTIVATOR OF BASAL TRANSCRIPTION 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000447 all species →	Biological Process	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0000472 all species →	Biological Process	endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0000480 all species →	Biological Process	endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0034462 all species →	Biological Process	small-subunit processome assembly	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14785	ESF2, ABT1; ESF2/ABP1 family protein	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.