Gene detail

Detailed information of KAM7445144.1 in Porites harrisoni

Genomic Location: Scaffold0065:226176...248783
NR annotation: no NCBI-NR hit recorded
Species Porites harrisoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-g6446.t1

CCATCATGGCGGATTTTTCGAACAACACAGTGCAAATTGAAACAGTGTCAAAAGGGGTGGCAAAGAGAAAGTATTTGCTGCTGGATGAGGATTTAGAGGACTTGAAATACCAGTTGAAAGATAATCCTGTAAATAAAAGTTATGCCGCcatgaaaatattcaagttaTCAGAAGTGGAATCTGTTGCTATAAGAAAATGGGGGAGTATGGAAAAACTGGAAGCTGAACAAGAGAAGAGGAAACAGCAGAACTCCAAgttggaaagaaaaaacgaagaGGAGAAAAGACATTTCTGGGACCACGAAGAAATATTTAAACCTCTTGAGCATTTCATGGTAAACCTAGAACTTCCGGAAGAACGTGTTTCCTGCTATTTTAGAGAGAAAATTGATGACGTTCTTGAACCCAGTGCAAAAGATGAAAGCCTCATTGACTGTGATGTAATCCTGTGTTTTTGTGACTGCCTTCATAATGTTCCTCCTGACTTTACGGCTCGCAGAATATTCAAAGAGTTTCCAGAGGCAAGACATGTTGACAAGGAGACACCTTATAATGAAAGACGAAAAATGGGACATTTCTCTTGGACTATAAGCAAGTCATTAAACAAACTCATTGTGAATTTTTACGTGGTACATAAATGGAAACGCTTATCTCAAAGACAGGAATCTACAATGATCAACTTTGATGCCCTCAGCATTGGGTTACGAAGATTCTCATCTTTATTGTCTAAAACACTCAGGAAAAATGGACGGCAACCAAACAGTTTATTGATTGGGACGTATGCACCATATAGAGTGAACTCTGAAAAATTCACAAAAATTTTATCAGATGATATGGAGCATCCTGTCAGAATCTTTACCAACGTCAGAAAACTGGACGCAAAAACCtcgaaataaaGATCGTTCAGACACTGAAATGGCCAGATTGCCAAACCGGCCTCCCTCCGTTTGCGCGCTGTCACCCCAAGAACTCTCATACGAAACAGTTGATGTTGACAAAGTTTACATCCCAACTAATGCGCTTTTGATCGCCGAAAACGAGTCGATATTTCTTGCGATCGCCAGCATTTTGAAAGATCGAAAGGCTGTGCTGATTGGAGGGGCAGGGTATATCTACTACGGAAAAATCAATTCCCGGCTTGTGTTTTTACTCAAAGCTCGAGGCGAGCCATCTGCAGTTGTCCAGGCCATCAAATCACTCAAACCAAAAGCTGGAATCTTTCTCGGGTTCGGGAAATGTCCTCATAACAGGCCGTATGAGATCGGGGACGTGATTGTGGCAGAAGCGATAGCTCGAAAGAACCCCAAATTTGGAAAACTTGAAAACCTAGCGTGCAGTGAATGTTTGATCAACGTGTTCGAAAATGGCAAATATGGATGGAAACCGCCCAAGTACCGCAAACAAGCTGTTCATGTTGGCAAAGTATTTCAGATGGGAGATTTTACAAAGAATGAGAAAACCAGTGCAGTAGCTGTGAAAACTTCGAGGTTAGATATACTTGAATGCTGCGAAGTCCTGGGTAAAGAATGGATCTCAATTGTAGGCGTGATTGCCACTCAGCGTTACCATGGAAACACTACTTGGAAGCAATACGTAGCAGCGGTCTTGAGCTCACTGGTGAATAAGGTGCTACAGGATGACCAAGTGTTTGCAATCTTAGGAGGAGAGGGTGGGGAGCCCAGACGACACAGTCCCCTCCCTGGAAACCCTCTGCAAGAAACAGTTTCTCTTAAAACATTTCAGCTGACGGGTTCAGACTTGTCCCTCCAGGAGGGGTTGATCCGGAGACAAGCAGATATGCACTGGACACAAGTGAAAGATGCATATGATAAAGGTTTCTTCCATCTACCAGGTCAACACAAAACCCAGTCAGACATCTTGCTGCAAGAGGAGTTTAGTATAACACCAACTGTTAAATCACCAGTGGAAAATAGCGAAGAATTAACTGACAAGGCTAATAGCTTATTGGCCATACGGGTACGTGAGCAAGCATCAAACGACGTCTCGGCAGATGGGAAACCTACAGATCTTGAAACAGGAAGTCGAGCTCTCTTTAGGGAACCGAATCGCTTCACTCTACCACCCCTTCGCTCTTTGTCTGCTGGGAATCGTAGGACATCTCTTCAGGATAACCTGACGAGCCATGCGCAAACTTGTCCTACGCTGACCTCTAGTATGGCTGTTACCATGCAAGCTGCACTGCTTCCAATAAGCGCCACCCTACAGACGCACGGCAGCTGCCCGGAAATAATCAGGATCAAGACAGAGGAGAGGGCAACGGTGAGCAGACAAGGAACAGTTCTCCCTCCCATAACCCGCCGACAGAAGAAAAGAGCGTGAAGTTTGCAAGTTGAATGTTCCCGagttttctaatggttttaGCGAACTGTCTAAATTGTTCAGTGAATACCATAACAAGCCAGCCACAAAAGGGTAGTGGATATAATGTATCACTCAGTTAAAAATTAATCCAGTCGTTTTAATTTGTTGATAGTTGCCATGCCCTTACAGGAGTTATCCTGATTTATCGTTTAATTAGTGAGTCAGTTATGATTAGTATTTGCGCTGGGGGTGGCTTGTCTTGCCCCCCGGCCACCCCCCACTTTTCGAACGAAATAACAAAAACTTATTCCTAGAGGGTATATTTGCGCCTGTAGACTACCAGCGATTTCATATGTATTTCATGCGTGGGAATGACGTATCCAGACGTAGAGCTGAGCCAGTTAAAGTTTTATACACTTTGTTATGCAACCTTGAAATATTGCTTTCAATAAAATTGCGGCTTAAGTCGCAGCTTAAATTAGTTTTAACATAAGTCACACAAAGGGGCAAAAAAAAAGACTCCGTGTAACGGGCGTTAACCCGAtttaaatacaaatacaaaataTTATAGTGTTATTGAGTTAAGTTGCGAAAAGCGGTGACGAGCCGAAACAACATAATGTAttctttatttgttcttttttgtatCAGTTTTGGTCAAGTTATCTGTATCATACACTCTCGCCAGTTTTGTGAATAAAAAGGATTTTGATAACTTGGTAGATATTCTAATGGGAAGGAAAAAATTACCCTTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05181 all species →	XPA_C	XPA protein C-terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037129 all species →	Homologous_superfamily	XPA domain superfamily	Interproscan
IPR022656 all species →	Domain	XPA, C-terminal	Interproscan
IPR009061 all species →	Homologous_superfamily	Putative DNA-binding domain superfamily	Interproscan
IPR000465 all species →	Family	XPA/RAD14	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10142 all species →	DNA REPAIR PROTEIN COMPLEMENTING XP-A CELLS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000110 all species →	Cellular Component	nucleotide-excision repair factor 1 complex	Interproscan
GO:0000715 all species →	Biological Process	nucleotide-excision repair, DNA damage recognition	Interproscan
GO:0003684 all species →	Molecular Function	damaged DNA binding	Interproscan
GO:0006284 all species →	Biological Process	base-excision repair	Interproscan
GO:0006289 all species →	Biological Process	nucleotide-excision repair	Interproscan
GO:0033683 all species →	Biological Process	obsolete nucleotide-excision repair, DNA incision	Interproscan
GO:0070914 all species →	Biological Process	UV-damage excision repair	Interproscan
GO:1901255 all species →	Biological Process	nucleotide-excision repair involved in interstrand cross-link repair	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for KAM7445144.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.