Gene detail

Detailed information of KAM7446554.1 in Porites harrisoni

Genomic Location: Scaffold0048:1515895...1521830
NR annotation: no NCBI-NR hit recorded
Species Porites harrisoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-g5335.t2

ATGGACAGTTGAGGTTGTACAGCTTTTGTTGAGCAACACGGAATTCCTTccatttttttctacttttggaGCGATAAAGCTTGAAAATGTAAGTCACTTACCTTCTTCAAAGtgatgtttttataaaaaaaaataccagaaCTTGATGAAATGCATCACCCTCTTCGAGCAACTTTTGGGAAAGAATTTTATTTCGATATTAGTTTTCGGTTGTAAATCTCAAGTTTGAAATGCTCACTTTGAAGAGCACTCTCAATTTTTTCTTAGAGAAGAATCAGTTTGACAGACCAAACGATTTTGGATACAAGGTTCATATTATTGTTTTCAAAATGTCTGACATGGATGATGACTTCATGTGTGATGATGAAGAGGAGTATGACTTGGAGTACTCAGAAGACAGTGCTTCAGAGCCAGACGTCGATTTAGAAAACCAGTATTACAACTCCAAAGCTTTGAAGGAAGATAATCCTAAAGGTTCTCTAGAGAGTTTCCAGAAAGTACTGGATCTTGAGTCTGAGAAGGGAGAGTGGGGTTTTAAGGCTTTGAAACAGATGATTAAGATCAACTTCAAACTGGGTCATTATGAGGAGATGATGACCAGATACCAGCAGTTGTTGACTTACATTAAGAGTGCTGTCACACGGAACCACTCTGAGAAGTCCATTAACTCCATCCTGGATTACATCTCCACTTCAAAACAGATGGAGCTGCTGCAGAATTTTTATGAGACCACTCTGGAGGCCCTTAAAGATGCTAAGAACGATAGGCTGTGGTTTAAGACAAACACAAAGCTGGGAAAGTTGTATTTTGATAGAGGAGAGTTCACCAAACTGGCAAAGATTTTAAAGCAGCTTCACCAATCTTGCCAAACCGATGAAGGGGAAGATGATCTCAAGAAAGGAACGCAGCTGCTTGAAATTTATGCACTGGAGATTCAAATGTACACTGCACAGAAGAATAACAAGAAGCTGAAAGCTTTGTATGAGCAGTCACTTCACATCAAGTCTGCTATCCCGCACCCGCTGATTATGGGGGTCATTCGTGAATGTGGTGGAAAGATGCACCTGCGAGAAGGTGACTATGAGAAAGCGCACACCGATTTCTTTGAGGCTTTCAAGAACTATGATGAGTCTGGTAGCGGGAGACGCACAACTTGCTTGAAATATCTGGTGTTGGCTAACATGCTGATGAAGTCTGGGATTAATCCTTTTGATTCACAAGAAGCAAAACCTTACAAAAATGACCCGGAGATTCTTGCTATGACCAATCTTGTCAGTGCTTACCAAAATGATGATAtcaatgaatttgaaaaaattcttaAGACCAACCGTAAGAACATTATGGATGACCCTTTCATTAGGGAGCACATAGAAGACCTGTTAAGAAACATACGAACGCAAGTGTTAATTAAACTGATCAAGCCATACACAAGGATTCATATTCCGTTTATTTCAAAGGAATTGAACATTGATACAGAAGAGGTTGAAAGCCTCCTTGTTTCCTGTATACTTGACAATACTATTCATGGCCGAATAGATCAGGTCAACCAGCTTCTAGAACTGACCAGAACCTCACAAAGTGTTGATAGATTTGCTGGCCTGGACAGGTGGACCACACAGGTTAATTCACTTCATACTGCTGTTGTAAACAAGATTGCATGAACTTGTGGAGAAAGAGGTAGCTTGCCATAAAAAGCAAAGATTGCTTGTACTGCATATCTGTGAATGCTTTTTACACATCTGAAGAACACTATCAGTGACTGTAGAGCTGATAGCAAGAACTACCTTGCTGGTTGATGCCACTTTACAGAACTTGTGGGTACATATGATTTTTTGTTTGACAATAATGATCAGCTACACTTTGTAATTGAAAACAAGTGTAGCTTTGATTGTTCATCAATGATCATCTGGATGTATAAAAGGTAAAAATGTTTATATGTAAACAAAAGTGTTTACTTTTAGTAGTATGTTTGACAGTTTGCATTTCTACTTATTTTCAGAGCACCAAAGGTTCTCCTCACTAGAGGGGAGGGGGCTGGGAGGGGGGGTATGCTCCCCAAGAAAGTTTTAAGTCTGGATTTTCAAGATGGCCTCTCTTTATTTTTCCATGCAAATTTCGTATTGAATCAGCACTACATGTAGTTAAAacttattattttcattttgcaaaaccTGCATCCAATAATATTgtattttattcttgaaataaagGGAATAATTAAAGGCTAAAGAGTGCCATCTTGATTAAAAGACTGGGTAAATGGCACTGTCcaaggtgcaaagaaagtcagtttaaTAGCTAGCATGTACTGGCCCAAGAGGTATTTTAACTAGcctgaaaatttttttgatgaATGGGCTTGATTGCAGCTCTTCTGTAATATAAATCCCCCagaaaacttcacttgcccatagGGCAAGTCTAGAACAGACTTTTTTGCTAGCCTGATAGCAAGATGAACTAACCCTGGCCTATTGGATACGCCTTTCTTTGCACGTTGACTGTCTCAACTTATATTATTGCGAAAAACCAGCTGTGCAAGTGCAATAATGTAGCCTCCATTTAGTGGCAAAAAAACACACTAAGAAGTTTTCCTTGAGGGTGTGCTGTTAACCCATTCTCAAGAAAAAACTGAAGGGAAAACAAGCTGCAAGGAAGCTAAATGATCAAAACTCTGATAGCTAAGATAGCTAAGTGGCTGGGCAATTCTGCTGGTAAAAGCAGTTAAGGGCAACTCTGCAAGACACCAAACAAGTCCTCATCACAACATGAATCCCattcaaaaaacttttttaagcATCAAAACTCCATTTTTAAGCTctgcccagggcttataagcagTCATTAATGGTGTTGATCATACGCTTCTTTGTTCCACCAATATCTCAGATAGCCTGGTAGGATCTGATTTCATAGCAAGAGACAATTTTTCGTCTGGTTTTGTTTGATGCAGTTAAAACATTTTACTTATTGACTGTGTCGTTTCATATTTCGTAGGCATGGTTGTCTGTCAATAAATTTGCAATTACCATTGTTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01399 all species →	PCI	PCI domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050871 all species →	Family	26S Proteasome and COP9 Signalosome Components	Interproscan
IPR000717 all species →	Domain	Proteasome component (PCI) domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10678 all species →	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000338 all species →	Biological Process	protein deneddylation	Interproscan
GO:0008180 all species →	Cellular Component	COP9 signalosome	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12176	COPS2, CSN2, TRIP15; COP9 signalosome complex subunit 2	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.