Gene detail

Detailed information of KAM7446583.1 in Porites harrisoni

Genomic Location: Scaffold0047:206362...215354
NR annotation: no NCBI-NR hit recorded
Species Porites harrisoni · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-g5202.t2

CAAAATGGCGGTTCATTTTTAATCGTTGATGTTGGACTTTTTGTTGTTGGCGCTTGGCAAGTGGCTTATAGTCTTTTAACTTATCTGAGGCCGGAAGTGATGAAGTACCGAAGCACACGAGGAAAGGTAGAAGCTACATCATTTGAAGATGTGCTTTTCAGCGGTTATGCCGGTGATGGTGGATTGTTTATGCCAGAGTGTATTCCAGTTGTTGATAGGGCCACCCTTGAGAAGTGGAAAGGACTTTCATATTTGGAGCTGACTAAGGAAGTGATGTCTCTTTTTATTCCTCCGGAGGAAATCACTTCTGAAGACTTGAATGACTTGATCAACAAAGCATTCTCAGAATTTGGACACAAAGACCTTCTTTCCATAGCAAAAGTCAACAATTTTCATGTGCTGGAACTATCTCATGGCAAAACTCTTGCATTTAAAGACTACGCTCTTGTAAGTGTTGGCATGTTCATGGAtttttttctgaagaaaaagaagaaaaacacaaTTGTTCTTGTGGGAACTTCTGGAGACACTGGTAGTGCAGCCATAGAAAGTGTACGCAGATCAGAATGGATTGACATCATTGTGCTGTTCCCTAAAGGACGTGCCAATCAGATACAAGAGCTGCAGATGACAACAGTAACGGATTCGAATGTTCATGTGTTTAGCACGGAGGGGACGTCAGATGATCTCGATAAACCtatcaaaaattgtttttctgATCACGAATATGCAGAGACCAATAATCTATCTTCAATTAATTCAATAAACTGGTGTCGCATTTTGGCACAGCTTGTGCATATTTTCTATGCTTACTTTCAAGTCTGCCAAGAAGTTGGAGACACTGTGAAGTTCATTATACCAACAGGGGCCCTTGGACATTGTACAGCTGGTCTGTATGTGCATAAAATGGGTCTCCCTGTGGAACTTGTTTGTGCTGTCAATGAGAATGACATTGTTCACCGTGCAATCTCTACTGGAGTTTTCACCATGTCAGAAGTGGTCCAGCAAACCTGGTCTACCGCCATGGACATTCAGGTAATGTAATCATTATTTTGTCTGTGAGTCTCATGGAGCCAGAGCCCTTGTGAGAGGTTACCTCAGTGTAAGGACCTGtaaaagatttactttttttgtttcttttatcattcttttgtttactttgttttacATCTGTGTTGAAAGTTACAAGTTCTTACACTGAGGATGAGCACCTTGCGATGCGCGAGGGAAAGACAGGTAGTTTTCTGCGCTAAGGTGTTTGCTCTTTTATCTTTGCGAAAAGTGGGGTAGGACAGGGAAGTAGGAGCTCAGGAGAATAGGGGAAAAAATACGAGGCCTATGTAAACAAACCTTAGTTTGGCcatcaattattgtttttttcactCTGGCCAGATTCGAAAAAGAACTCTGAAAAGGCGTGAAGTGGGAGTTCTAAAAGGGGTGGAAAGCGGGAGAAATAGGGGGGAATCATGCAACGTTGCTTAGtatttcgtttttaaaaaaacgggCTAAAGAAAGAGAAATCGAAGAAAAAAGGGGTGTGAGCCCGGTGTGCAAGGTACGGGAGGCGGGAGGTTTGGACCAGGGCCccctatccccccccccccccattacAGAAAAATCTCCTAGCTCACTCTGTTCTTGTTTTTtcgcatatttttcttttcgtagTTCTTTTCCGAGTGTTGTCAGGGTAAGAATAATCTCTGACCATACTAAGGCCCCTTTCTCCTTTCAATAGGCGTCttctttccgttttttttttggccgacTATGTAATGCAGCGTTTTTCCGTAGCCTGCATCTGATGTTTATATGTATACCCTAAGTAGTTTTTGTGGGGGAAACGTTTACGCAGAAAATCACTGATAAATGATCACCAATCGCATCAAATCTCGAGAAATCGCAGATTTTGTTGCAGCCCCTTCTACCACCTCTAACTcctgaatttaaaaattttagctaattctgcgatttctccaatttttcgcaatttttagaaaaatcgcaaaaattgcaGAAATCGTAGATTTTATTGGGCCCCCTTCGACCCCCTCTAACACTTGAATTTTCCAGTGTCAACAAAatctgcgatttctccaattttttgcaatttttgtagCTGCGTGACATATCTCAAAATTCGTGCTGGCCTGAAACAACGGCAATTTTGCGGCAAGAAATCGCTTGATATTAGGGACCTTatagcaacaacgacggcggcagctgcgaaaacgtcacttaaaaagtgaagtcgcgctgcttcaaactttatcgcgcttattccatttcgttcaattcgtcaaatgttggcaatttttttgtgaacTTGAATTCTTAAAGACTGTGTGGAAGTTTAGGAAAAGGCAAAGAAAGTCTTTCGTTAACATCCTCTACAAAACGTGAAGTTAAGtattttcatgtcgtagtcgtgcagtggcggcaaagaaatgtaccaaaaagcgtgatgcacgtgcagacttgttgttttgcctatCTAAacgtattgcttttttgacgttctcgttgacgtcgacGTCGTCTAAATTGATACCCAGTTTAAGTTTGTGTGTCGTTTTTTATAGGTTCCGTATAATTTTGAGCGCCTGTTGCTCCTTTCTTCTGATATGAACTACGCTCTAGTCGACTCCCTGATGCAAGACTTCGAGCAGaataattctttgaaaataccTGAGGACTTGAAAAAGGAGGTAAGAAGTATTATGTACACCTCACAAGAAGGTTTCAATCTTATTTGTATTTGGTCTTTGGTTAGCCACTAG

Protein

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004840 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14821 all species →	Thr_synth_N	Threonine synthase N terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004450 all species →	Family	Threonine synthase-like	Interproscan
IPR036052 all species →	Homologous_superfamily	Tryptophan synthase beta chain-like, PALP domain superfamily	Interproscan
IPR029144 all species →	Domain	Threonine synthase, N-terminal	Interproscan
IPR037158 all species →	Homologous_superfamily	Threonine synthase, N-terminal domain superfamily	Interproscan
IPR051166 all species →	Family	Threonine Synthase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42690 all species →	THREONINE SYNTHASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009071 all species →	Biological Process	serine family amino acid catabolic process	Interproscan
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0046360 all species →	Biological Process	2-oxobutyrate biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01733	thrC; threonine synthase	EC:4.2.3.1	Vitamin B6 metabolism	ko00750	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.